Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6193 and GFF6194 are separated by 46 nucleotides GFF6194 and GFF6195 overlap by 4 nucleotides GFF6195 and GFF6196 are separated by 7 nucleotides GFF6196 and GFF6197 overlap by 4 nucleotides
GFF6193 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 99,567 to 101,060
GFF6193
GFF6194 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 101,107 to 101,922
GFF6194
GFF6195 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 101,919 to 102,926
GFF6195
GFF6196 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 102,934 to 103,815
GFF6196
GFF6197 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 103,812 to 104,762
GFF6197
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 101.066 kb on - strand at 101.153 kb on + strand at 101.153 kb on + strand at 101.154 kb on - strand at 101.154 kb on - strand at 101.280 kb on - strand, within GFF6194 at 101.280 kb on - strand, within GFF6194 at 101.280 kb on - strand, within GFF6194 at 101.280 kb on - strand, within GFF6194 at 101.598 kb on - strand, within GFF6194 at 101.861 kb on + strand at 102.247 kb on + strand, within GFF6195 at 102.247 kb on + strand, within GFF6195 at 102.247 kb on + strand, within GFF6195 at 102.247 kb on + strand, within GFF6195 at 102.247 kb on + strand, within GFF6195 at 102.248 kb on - strand, within GFF6195 at 103.532 kb on - strand, within GFF6196 at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 101,066 - +0.3 101,153 + -2.9 101,153 + -1.4 101,154 - -2.6 101,154 - -1.3 101,280 - GFF6194 0.21 -3.9 101,280 - GFF6194 0.21 -1.6 101,280 - GFF6194 0.21 -2.3 101,280 - GFF6194 0.21 -1.9 101,598 - GFF6194 0.60 -1.0 101,861 + +0.5 102,247 + GFF6195 0.33 -2.3 102,247 + GFF6195 0.33 -2.5 102,247 + GFF6195 0.33 -1.8 102,247 + GFF6195 0.33 -1.3 102,247 + GFF6195 0.33 -2.1 102,248 - GFF6195 0.33 -0.1 103,532 - GFF6196 0.68 -1.8 103,816 - -0.9 103,816 - -2.9 103,816 - -1.1 103,816 - -2.9
Or see this region's nucleotide sequence