Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6189 and GFF6190 are separated by 451 nucleotides GFF6190 and GFF6191 are separated by 9 nucleotides
GFF6189 - Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase, at 94,663 to 95,334
GFF6189
GFF6190 - 3-hydroxyisobutyrate dehydrogenase family protein, at 95,786 to 96,676
GFF6190
GFF6191 - Aldehyde dehydrogenase (EC 1.2.1.3), at 96,686 to 98,134
GFF6191
Position (kb) 95
96
97 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 94.798 kb on + strand, within GFF6189 at 94.798 kb on + strand, within GFF6189 at 94.799 kb on - strand, within GFF6189 at 94.799 kb on - strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.906 kb on + strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.907 kb on - strand, within GFF6189 at 94.961 kb on + strand, within GFF6189 at 94.961 kb on + strand, within GFF6189 at 94.961 kb on + strand, within GFF6189 at 94.962 kb on - strand, within GFF6189 at 94.962 kb on - strand, within GFF6189 at 94.962 kb on - strand, within GFF6189 at 94.962 kb on - strand, within GFF6189 at 94.962 kb on - strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.167 kb on + strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.168 kb on - strand, within GFF6189 at 95.220 kb on + strand, within GFF6189 at 95.220 kb on + strand, within GFF6189 at 95.220 kb on + strand, within GFF6189 at 95.220 kb on + strand, within GFF6189 at 95.221 kb on - strand, within GFF6189 at 95.221 kb on - strand, within GFF6189 at 95.236 kb on + strand, within GFF6189 at 95.236 kb on + strand, within GFF6189 at 95.236 kb on + strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.237 kb on - strand, within GFF6189 at 95.242 kb on + strand, within GFF6189 at 95.242 kb on + strand, within GFF6189 at 95.242 kb on + strand, within GFF6189 at 95.242 kb on + strand, within GFF6189 at 95.242 kb on + strand, within GFF6189 at 95.242 kb on + strand, within GFF6189 at 95.243 kb on - strand, within GFF6189 at 95.243 kb on - strand, within GFF6189 at 95.291 kb on + strand at 95.291 kb on + strand at 95.291 kb on + strand at 95.291 kb on + strand at 95.291 kb on + strand at 95.292 kb on - strand at 95.292 kb on - strand at 95.292 kb on - strand at 95.318 kb on + strand at 95.318 kb on + strand at 95.412 kb on + strand at 95.412 kb on + strand at 95.413 kb on - strand at 95.432 kb on + strand at 95.432 kb on + strand at 95.433 kb on - strand at 95.433 kb on - strand at 95.433 kb on - strand at 95.467 kb on + strand at 95.467 kb on + strand at 95.468 kb on - strand at 95.468 kb on - strand at 95.550 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.554 kb on + strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.555 kb on - strand at 95.579 kb on - strand at 95.601 kb on + strand at 95.601 kb on + strand at 95.601 kb on + strand at 95.601 kb on + strand at 95.621 kb on + strand at 95.655 kb on + strand at 95.655 kb on + strand at 95.655 kb on + strand at 95.656 kb on - strand at 95.668 kb on + strand at 95.668 kb on + strand at 95.668 kb on + strand at 95.668 kb on + strand at 95.668 kb on + strand at 95.669 kb on - strand at 95.676 kb on + strand at 95.676 kb on + strand at 95.676 kb on + strand at 95.676 kb on + strand at 95.676 kb on + strand at 95.676 kb on + strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.677 kb on - strand at 95.916 kb on + strand, within GFF6190 at 95.916 kb on + strand, within GFF6190 at 95.916 kb on + strand, within GFF6190 at 95.916 kb on + strand, within GFF6190 at 95.916 kb on + strand, within GFF6190 at 95.916 kb on + strand, within GFF6190 at 95.916 kb on + strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.917 kb on - strand, within GFF6190 at 95.919 kb on + strand, within GFF6190 at 95.919 kb on + strand, within GFF6190 at 95.920 kb on - strand, within GFF6190 at 95.920 kb on - strand, within GFF6190 at 95.920 kb on - strand, within GFF6190 at 96.794 kb on + strand at 96.794 kb on + strand at 96.794 kb on + strand at 96.794 kb on + strand at 96.795 kb on - strand at 96.795 kb on - strand at 96.795 kb on - strand at 96.795 kb on - strand at 96.795 kb on - strand at 96.813 kb on + strand at 96.813 kb on + strand at 96.813 kb on + strand at 96.814 kb on - strand at 96.887 kb on + strand, within GFF6191 at 96.888 kb on - strand, within GFF6191 at 97.041 kb on + strand, within GFF6191 at 97.041 kb on + strand, within GFF6191 at 97.041 kb on + strand, within GFF6191 at 97.042 kb on - strand, within GFF6191 at 97.042 kb on - strand, within GFF6191 at 97.042 kb on - strand, within GFF6191 at 97.042 kb on - strand, within GFF6191 at 97.044 kb on + strand, within GFF6191 at 97.045 kb on - strand, within GFF6191 at 97.242 kb on + strand, within GFF6191 at 97.675 kb on - strand, within GFF6191 at 97.675 kb on - strand, within GFF6191
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 94,798 + GFF6189 0.20 +1.3 94,798 + GFF6189 0.20 +0.5 94,799 - GFF6189 0.20 -0.4 94,799 - GFF6189 0.20 +0.5 94,906 + GFF6189 0.36 +0.4 94,906 + GFF6189 0.36 +0.3 94,906 + GFF6189 0.36 -1.8 94,906 + GFF6189 0.36 +0.8 94,906 + GFF6189 0.36 -1.8 94,906 + GFF6189 0.36 -1.7 94,906 + GFF6189 0.36 +1.5 94,906 + GFF6189 0.36 -0.5 94,906 + GFF6189 0.36 -2.3 94,906 + GFF6189 0.36 -0.4 94,906 + GFF6189 0.36 -3.4 94,906 + GFF6189 0.36 -0.5 94,906 + GFF6189 0.36 -3.2 94,906 + GFF6189 0.36 +1.9 94,906 + GFF6189 0.36 -0.4 94,907 - GFF6189 0.36 +0.3 94,907 - GFF6189 0.36 +0.3 94,907 - GFF6189 0.36 +0.8 94,907 - GFF6189 0.36 +0.1 94,907 - GFF6189 0.36 -0.7 94,907 - GFF6189 0.36 -1.8 94,907 - GFF6189 0.36 -1.1 94,907 - GFF6189 0.36 -2.4 94,907 - GFF6189 0.36 +0.6 94,907 - GFF6189 0.36 +1.5 94,907 - GFF6189 0.36 -2.4 94,961 + GFF6189 0.44 -1.4 94,961 + GFF6189 0.44 +0.2 94,961 + GFF6189 0.44 +1.9 94,962 - GFF6189 0.44 -1.3 94,962 - GFF6189 0.44 +1.0 94,962 - GFF6189 0.44 -1.0 94,962 - GFF6189 0.44 +0.9 94,962 - GFF6189 0.44 +0.3 95,167 + GFF6189 0.75 -2.8 95,167 + GFF6189 0.75 -0.8 95,167 + GFF6189 0.75 -2.0 95,167 + GFF6189 0.75 -0.4 95,167 + GFF6189 0.75 +0.8 95,167 + GFF6189 0.75 +1.5 95,167 + GFF6189 0.75 +0.1 95,167 + GFF6189 0.75 -1.6 95,167 + GFF6189 0.75 +1.9 95,167 + GFF6189 0.75 +1.4 95,167 + GFF6189 0.75 -0.5 95,167 + GFF6189 0.75 -0.3 95,167 + GFF6189 0.75 -2.8 95,167 + GFF6189 0.75 +1.3 95,167 + GFF6189 0.75 -2.4 95,167 + GFF6189 0.75 +2.2 95,167 + GFF6189 0.75 -0.4 95,167 + GFF6189 0.75 +0.3 95,167 + GFF6189 0.75 +0.6 95,167 + GFF6189 0.75 -1.3 95,167 + GFF6189 0.75 -1.4 95,167 + GFF6189 0.75 +0.7 95,168 - GFF6189 0.75 -0.4 95,168 - GFF6189 0.75 -1.9 95,168 - GFF6189 0.75 -1.4 95,168 - GFF6189 0.75 -1.1 95,168 - GFF6189 0.75 -2.0 95,168 - GFF6189 0.75 +0.8 95,168 - GFF6189 0.75 -0.2 95,168 - GFF6189 0.75 -0.7 95,168 - GFF6189 0.75 +1.1 95,168 - GFF6189 0.75 +0.1 95,168 - GFF6189 0.75 -3.4 95,168 - GFF6189 0.75 +1.2 95,168 - GFF6189 0.75 -0.3 95,168 - GFF6189 0.75 +1.2 95,168 - GFF6189 0.75 -1.0 95,168 - GFF6189 0.75 +0.5 95,168 - GFF6189 0.75 +1.2 95,220 + GFF6189 0.83 -0.6 95,220 + GFF6189 0.83 +2.6 95,220 + GFF6189 0.83 +0.0 95,220 + GFF6189 0.83 -1.6 95,221 - GFF6189 0.83 -0.0 95,221 - GFF6189 0.83 -0.1 95,236 + GFF6189 0.85 -1.9 95,236 + GFF6189 0.85 +0.6 95,236 + GFF6189 0.85 -1.3 95,237 - GFF6189 0.85 -0.7 95,237 - GFF6189 0.85 -1.4 95,237 - GFF6189 0.85 -0.3 95,237 - GFF6189 0.85 -0.5 95,237 - GFF6189 0.85 -3.6 95,237 - GFF6189 0.85 -0.7 95,237 - GFF6189 0.85 -0.4 95,242 + GFF6189 0.86 +0.1 95,242 + GFF6189 0.86 +1.7 95,242 + GFF6189 0.86 +1.2 95,242 + GFF6189 0.86 +1.0 95,242 + GFF6189 0.86 +1.0 95,242 + GFF6189 0.86 -0.5 95,243 - GFF6189 0.86 -1.3 95,243 - GFF6189 0.86 -2.9 95,291 + +0.0 95,291 + -0.1 95,291 + -0.1 95,291 + -0.1 95,291 + +0.5 95,292 - -1.1 95,292 - +2.9 95,292 - -2.6 95,318 + -1.7 95,318 + +0.3 95,412 + -3.9 95,412 + -0.7 95,413 - -0.9 95,432 + -1.4 95,432 + -1.1 95,433 - -2.1 95,433 - +0.9 95,433 - -1.9 95,467 + -1.1 95,467 + -0.7 95,468 - -1.0 95,468 - -1.4 95,550 + -1.7 95,554 + -0.1 95,554 + -0.4 95,554 + -0.4 95,554 + -0.7 95,554 + -0.6 95,554 + -2.0 95,554 + -0.9 95,554 + -3.6 95,554 + -1.9 95,554 + +0.4 95,554 + -2.3 95,554 + +0.3 95,554 + +0.3 95,554 + -3.0 95,554 + -0.6 95,554 + -0.1 95,554 + -1.8 95,554 + -0.4 95,554 + +0.9 95,554 + -2.9 95,554 + -1.9 95,555 - -0.4 95,555 - -1.4 95,555 - +0.3 95,555 - -0.4 95,555 - -3.7 95,555 - -1.5 95,555 - +0.3 95,555 - -0.7 95,555 - -0.4 95,555 - -1.1 95,579 - -0.4 95,601 + -1.3 95,601 + -0.9 95,601 + -1.8 95,601 + -0.4 95,621 + -2.2 95,655 + -2.6 95,655 + -1.8 95,655 + -2.4 95,656 - -0.4 95,668 + -0.9 95,668 + -0.1 95,668 + -2.1 95,668 + -0.4 95,668 + -0.7 95,669 - -0.9 95,676 + -0.4 95,676 + -0.7 95,676 + -1.9 95,676 + -1.3 95,676 + -4.0 95,676 + +0.9 95,677 - -2.6 95,677 - +0.3 95,677 - -2.4 95,677 - -2.6 95,677 - -0.4 95,677 - -0.4 95,677 - +0.3 95,677 - +0.3 95,677 - -0.4 95,677 - -3.0 95,916 + GFF6190 0.15 -3.2 95,916 + GFF6190 0.15 -2.0 95,916 + GFF6190 0.15 -2.5 95,916 + GFF6190 0.15 -2.1 95,916 + GFF6190 0.15 -2.2 95,916 + GFF6190 0.15 -2.2 95,916 + GFF6190 0.15 -2.5 95,917 - GFF6190 0.15 -2.8 95,917 - GFF6190 0.15 -2.7 95,917 - GFF6190 0.15 -3.1 95,917 - GFF6190 0.15 -3.8 95,917 - GFF6190 0.15 +0.9 95,917 - GFF6190 0.15 -0.7 95,917 - GFF6190 0.15 -5.1 95,917 - GFF6190 0.15 -3.4 95,919 + GFF6190 0.15 -0.4 95,919 + GFF6190 0.15 -0.8 95,920 - GFF6190 0.15 +0.9 95,920 - GFF6190 0.15 -3.2 95,920 - GFF6190 0.15 -2.1 96,794 + -4.0 96,794 + -2.6 96,794 + -2.4 96,794 + -2.3 96,795 - -1.3 96,795 - -2.9 96,795 - -0.1 96,795 - -2.1 96,795 - -1.8 96,813 + -1.8 96,813 + +0.3 96,813 + -0.9 96,814 - -2.2 96,887 + GFF6191 0.14 -3.8 96,888 - GFF6191 0.14 -2.3 97,041 + GFF6191 0.24 -2.9 97,041 + GFF6191 0.24 +0.9 97,041 + GFF6191 0.24 -3.2 97,042 - GFF6191 0.25 -4.3 97,042 - GFF6191 0.25 -3.2 97,042 - GFF6191 0.25 -1.5 97,042 - GFF6191 0.25 -0.4 97,044 + GFF6191 0.25 -4.8 97,045 - GFF6191 0.25 -4.6 97,242 + GFF6191 0.38 -1.7 97,675 - GFF6191 0.68 -0.7 97,675 - GFF6191 0.68 -1.1
Or see this region's nucleotide sequence