Strain Fitness in Variovorax sp. SCN45 around GFF6173

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
75,751	+		GFF6171	0.68	+0.5
75,751	+		GFF6171	0.68	+1.4
75,751	+		GFF6171	0.68	+1.4
75,752	-		GFF6171	0.68	+0.3
75,752	-		GFF6171	0.68	-2.6
75,752	-		GFF6171	0.68	+0.9
75,752	-		GFF6171	0.68	-1.7
75,804	+		GFF6171	0.71	-3.0
75,805	+		GFF6171	0.71	+0.8
75,806	-		GFF6171	0.71	-0.5
75,946	+		GFF6171	0.79	-2.7
75,946	+		GFF6171	0.79	+1.3
75,946	+		GFF6171	0.79	-0.7
75,946	+		GFF6171	0.79	+1.3
75,946	+		GFF6171	0.79	-0.3
75,947	-		GFF6171	0.80	+0.3
75,947	-		GFF6171	0.80	-0.4
75,947	-		GFF6171	0.80	-0.6
75,947	-		GFF6171	0.80	-1.1
75,947	-		GFF6171	0.80	+0.7
76,054	+		GFF6171	0.86	-1.4
76,054	+		GFF6171	0.86	-1.4
76,055	-		GFF6171	0.86	-1.2
76,055	-		GFF6171	0.86	-2.5
76,623	-		GFF6172	0.69	+0.8
76,655	+		GFF6172	0.78	-0.6
76,679	+		GFF6172	0.85	-0.4
76,679	+		GFF6172	0.85	+0.1
76,679	+		GFF6172	0.85	-1.1
76,679	+		GFF6172	0.85	-1.9
76,679	+		GFF6172	0.85	-1.4
76,679	+		GFF6172	0.85	+1.9
76,679	+		GFF6172	0.85	-3.5
76,679	+		GFF6172	0.85	-0.9
76,679	+		GFF6172	0.85	-2.4
76,680	-		GFF6172	0.85	-0.1
76,680	-		GFF6172	0.85	-0.3
76,680	-		GFF6172	0.85	-1.8
76,680	-		GFF6172	0.85	+0.3
76,680	-		GFF6172	0.85	-0.5
76,680	-		GFF6172	0.85	-0.7
76,680	-		GFF6172	0.85	-0.6
76,680	-		GFF6172	0.85	+1.2
76,680	-		GFF6172	0.85	-0.7
76,727	+				+1.1
76,811	+				-1.6
77,038	+		GFF6173	0.10	-0.2
77,038	+		GFF6173	0.10	+0.5
77,038	+		GFF6173	0.10	+0.5
77,038	+		GFF6173	0.10	+1.8
77,039	-		GFF6173	0.10	+1.1
77,164	+		GFF6173	0.15	-2.8
77,164	+		GFF6173	0.15	+2.2
77,164	+		GFF6173	0.15	-0.2
77,164	+		GFF6173	0.15	+0.1
77,164	+		GFF6173	0.15	-1.7
77,227	+		GFF6173	0.17	+0.5
77,228	-		GFF6173	0.17	-2.5
77,228	-		GFF6173	0.17	+0.4
77,356	+		GFF6173	0.21	+0.7
77,356	+		GFF6173	0.21	-1.1
77,356	+		GFF6173	0.21	-0.9
77,356	+		GFF6173	0.21	+2.7
77,356	+		GFF6173	0.21	+0.9
77,357	-		GFF6173	0.21	+0.3
77,357	-		GFF6173	0.21	+0.5
77,357	-		GFF6173	0.21	-2.2
77,357	-		GFF6173	0.21	+1.9
77,357	-		GFF6173	0.21	+0.9
77,357	-		GFF6173	0.21	+0.8
77,357	-		GFF6173	0.21	+0.4
77,734	+		GFF6173	0.34	-0.7
77,734	+		GFF6173	0.34	+0.6
77,734	+		GFF6173	0.34	-0.0
77,734	+		GFF6173	0.34	-2.0
77,734	+		GFF6173	0.34	+0.6
77,734	+		GFF6173	0.34	+1.5
77,734	+		GFF6173	0.34	-1.7
77,734	+		GFF6173	0.34	-1.6
77,734	+		GFF6173	0.34	-1.7
77,734	+		GFF6173	0.34	-1.9
77,735	-		GFF6173	0.34	-0.8
77,735	-		GFF6173	0.34	+0.5
77,735	-		GFF6173	0.34	-1.6
77,735	-		GFF6173	0.34	-0.3
77,735	-		GFF6173	0.34	+0.9
77,735	-		GFF6173	0.34	-1.4
77,735	-		GFF6173	0.34	+1.0
77,735	-		GFF6173	0.34	-0.4
77,735	-		GFF6173	0.34	+0.6
77,735	-		GFF6173	0.34	+1.7
77,735	-		GFF6173	0.34	+1.9
77,735	-		GFF6173	0.34	-0.3
77,735	-		GFF6173	0.34	+1.7
77,738	+		GFF6173	0.34	-1.6
78,118	+		GFF6173	0.47	-0.8
78,118	+		GFF6173	0.47	+0.0
78,119	-		GFF6173	0.47	-0.5
78,196	+		GFF6173	0.50	-2.6
78,196	+		GFF6173	0.50	+0.1
78,197	-		GFF6173	0.50	-0.1
78,197	-		GFF6173	0.50	+0.6
78,407	-		GFF6173	0.57	-1.9
78,407	-		GFF6173	0.57	-0.2
78,407	-		GFF6173	0.57	-3.1
78,778	+		GFF6173	0.69	+0.3
78,952	+		GFF6173	0.75	-1.2
78,953	-		GFF6173	0.75	+0.2
78,953	-		GFF6173	0.75	-0.8
78,953	-		GFF6173	0.75	-0.6
79,041	+		GFF6173	0.78	+1.5
79,041	+		GFF6173	0.78	-1.1
79,042	-		GFF6173	0.78	-0.4
79,042	-		GFF6173	0.78	-0.7
79,235	-		GFF6173	0.85	-0.9
79,384	+		GFF6173	0.90	-1.4
79,384	+		GFF6173	0.90	-1.8
79,384	+		GFF6173	0.90	-2.6
79,384	+		GFF6173	0.90	+0.8
79,384	+		GFF6173	0.90	+2.6
79,384	+		GFF6173	0.90	-1.8
79,384	+		GFF6173	0.90	-0.4
79,384	+		GFF6173	0.90	-2.1
79,384	+		GFF6173	0.90	+1.1
79,384	+		GFF6173	0.90	+1.3
79,384	+		GFF6173	0.90	-0.1
79,384	+		GFF6173	0.90	+0.6
79,384	+		GFF6173	0.90	+1.3
79,384	+		GFF6173	0.90	+0.0
79,384	+		GFF6173	0.90	+1.6
79,384	+		GFF6173	0.90	+0.4
79,384	+		GFF6173	0.90	+1.0
79,384	+		GFF6173	0.90	+0.9
79,384	+		GFF6173	0.90	-0.4
79,384	+		GFF6173	0.90	+0.2
79,384	+		GFF6173	0.90	+0.0
79,384	+		GFF6173	0.90	+0.1
79,384	+		GFF6173	0.90	+0.3
79,384	+		GFF6173	0.90	+0.1
79,385	-				+1.3
79,385	-				+0.9
79,385	-				-0.7
79,385	-				-1.4
79,385	-				-1.9
79,385	-				-0.2
79,385	-				+1.1
79,385	-				+2.7
79,385	-				-0.0
79,385	-				-0.3
79,385	-				-0.2
79,385	-				-0.0
79,385	-				-1.5
79,385	-				-2.7
79,385	-				+1.2
79,385	-				+0.9
79,385	-				-0.3
79,385	-				-1.4
79,385	-				+1.2
79,385	-				-1.1
79,385	-				+0.2
79,385	-				+0.7
79,385	-				-3.3
79,387	+				-0.5
79,387	+				-0.7
79,387	+				-2.0
79,387	+				-0.4
79,387	+				+0.4
79,388	-				+2.2
79,396	+				+0.9
79,396	+				+0.4
79,396	+				+0.2
79,396	+				+0.2
79,396	+				-0.1
79,397	-				-2.4
79,397	-				-0.2
79,397	-				-0.0
79,397	-				+0.7
79,397	-				+2.1
79,705	+				+0.3
79,705	+				-1.3
79,706	-				+1.9
79,717	+				+1.1
79,717	+				-0.3
79,718	-				+0.5
79,718	-				-2.0
79,721	+				+1.4
79,722	-				-0.5
79,722	-				+1.2
79,736	+				-0.4
79,737	-				-0.1
79,737	-				-2.4
79,737	-				+0.4
79,737	-				-0.0
79,737	-				-0.3
80,001	-		GFF6174	0.65	+0.5
80,001	-		GFF6174	0.65	-1.8
80,378	+		GFF6175	0.50	+0.2
80,535	+				-3.5
80,535	+				+0.2
80,536	-				+1.2
80,536	-				-0.7
80,536	-				+0.2
80,536	-				+3.1
80,536	-				-1.6
80,540	-				+0.5
80,656	+				-1.7
80,656	+				-0.2
80,656	+				+1.9
80,656	+				+0.7
80,656	+				-0.3
80,656	+				-1.0
80,657	-				+1.5
80,657	-				-1.2
80,657	-				-1.1
80,657	-				+0.3