Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6164 and GFF6165 overlap by 4 nucleotides GFF6165 and GFF6166 are separated by 49 nucleotides GFF6166 and GFF6167 are separated by 109 nucleotides
GFF6164 - FIG01094124: hypothetical protein, at 69,691 to 70,740
GFF6164
GFF6165 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 70,737 to 71,603
GFF6165
GFF6166 - Transcriptional regulator, AcrR family, at 71,653 to 72,312
GFF6166
GFF6167 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 72,422 to 73,426
GFF6167
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 70.668 kb on - strand at 70.668 kb on - strand at 70.796 kb on - strand at 70.796 kb on - strand at 70.972 kb on + strand, within GFF6165 at 70.972 kb on + strand, within GFF6165 at 71.146 kb on + strand, within GFF6165 at 71.147 kb on - strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.344 kb on + strand, within GFF6165 at 71.345 kb on - strand, within GFF6165 at 71.345 kb on - strand, within GFF6165 at 71.567 kb on - strand at 71.582 kb on - strand at 71.603 kb on + strand at 71.603 kb on + strand at 71.603 kb on + strand at 71.604 kb on - strand at 71.604 kb on - strand at 71.604 kb on - strand at 71.778 kb on - strand, within GFF6166 at 71.778 kb on - strand, within GFF6166 at 71.801 kb on + strand, within GFF6166 at 71.801 kb on + strand, within GFF6166 at 71.801 kb on + strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.802 kb on - strand, within GFF6166 at 71.987 kb on + strand, within GFF6166 at 71.988 kb on - strand, within GFF6166 at 72.080 kb on + strand, within GFF6166 at 72.081 kb on - strand, within GFF6166 at 72.104 kb on + strand, within GFF6166 at 72.104 kb on + strand, within GFF6166 at 72.105 kb on - strand, within GFF6166 at 72.105 kb on - strand, within GFF6166 at 72.105 kb on - strand, within GFF6166 at 72.105 kb on - strand, within GFF6166 at 72.128 kb on + strand, within GFF6166 at 72.128 kb on + strand, within GFF6166 at 72.129 kb on - strand, within GFF6166 at 72.129 kb on - strand, within GFF6166 at 72.129 kb on - strand, within GFF6166 at 72.129 kb on - strand, within GFF6166 at 72.134 kb on + strand, within GFF6166 at 72.135 kb on - strand, within GFF6166 at 72.135 kb on - strand, within GFF6166 at 72.375 kb on - strand at 72.558 kb on - strand, within GFF6167 at 72.558 kb on - strand, within GFF6167 at 72.558 kb on - strand, within GFF6167 at 72.560 kb on + strand, within GFF6167 at 72.560 kb on + strand, within GFF6167 at 72.560 kb on + strand, within GFF6167 at 72.561 kb on - strand, within GFF6167 at 72.561 kb on - strand, within GFF6167 at 72.582 kb on - strand, within GFF6167 at 72.743 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.977 kb on + strand, within GFF6167 at 72.978 kb on - strand, within GFF6167 at 72.978 kb on - strand, within GFF6167 at 73.058 kb on + strand, within GFF6167 at 73.059 kb on - strand, within GFF6167 at 73.059 kb on - strand, within GFF6167 at 73.088 kb on + strand, within GFF6167 at 73.145 kb on + strand, within GFF6167 at 73.145 kb on + strand, within GFF6167
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 70,668 - -2.3 70,668 - +0.9 70,796 - -2.6 70,796 - -0.1 70,972 + GFF6165 0.27 -1.4 70,972 + GFF6165 0.27 +0.3 71,146 + GFF6165 0.47 +0.1 71,147 - GFF6165 0.47 -1.4 71,344 + GFF6165 0.70 -1.5 71,344 + GFF6165 0.70 -0.1 71,344 + GFF6165 0.70 +3.1 71,344 + GFF6165 0.70 -1.5 71,344 + GFF6165 0.70 -0.1 71,344 + GFF6165 0.70 -0.6 71,344 + GFF6165 0.70 -1.8 71,345 - GFF6165 0.70 -0.6 71,345 - GFF6165 0.70 -0.9 71,567 - +0.5 71,582 - -0.4 71,603 + -2.3 71,603 + -1.0 71,603 + -0.1 71,604 - +1.3 71,604 - -1.7 71,604 - -1.2 71,778 - GFF6166 0.19 -1.7 71,778 - GFF6166 0.19 -0.2 71,801 + GFF6166 0.22 -2.4 71,801 + GFF6166 0.22 -0.7 71,801 + GFF6166 0.22 -1.7 71,802 - GFF6166 0.23 +2.1 71,802 - GFF6166 0.23 +0.9 71,802 - GFF6166 0.23 -0.4 71,802 - GFF6166 0.23 -1.4 71,802 - GFF6166 0.23 -2.0 71,802 - GFF6166 0.23 -3.7 71,802 - GFF6166 0.23 -0.5 71,802 - GFF6166 0.23 -1.6 71,987 + GFF6166 0.51 -1.2 71,988 - GFF6166 0.51 -0.5 72,080 + GFF6166 0.65 +0.4 72,081 - GFF6166 0.65 -1.8 72,104 + GFF6166 0.68 +1.3 72,104 + GFF6166 0.68 +0.3 72,105 - GFF6166 0.68 -1.7 72,105 - GFF6166 0.68 -0.1 72,105 - GFF6166 0.68 -0.3 72,105 - GFF6166 0.68 -0.9 72,128 + GFF6166 0.72 +0.7 72,128 + GFF6166 0.72 -0.1 72,129 - GFF6166 0.72 -0.9 72,129 - GFF6166 0.72 -0.4 72,129 - GFF6166 0.72 -0.8 72,129 - GFF6166 0.72 +0.3 72,134 + GFF6166 0.73 -0.2 72,135 - GFF6166 0.73 +0.6 72,135 - GFF6166 0.73 -1.9 72,375 - -0.1 72,558 - GFF6167 0.14 +1.9 72,558 - GFF6167 0.14 -2.2 72,558 - GFF6167 0.14 -0.4 72,560 + GFF6167 0.14 +0.6 72,560 + GFF6167 0.14 -1.2 72,560 + GFF6167 0.14 -0.2 72,561 - GFF6167 0.14 -2.2 72,561 - GFF6167 0.14 +0.9 72,582 - GFF6167 0.16 +0.2 72,743 + GFF6167 0.32 -0.9 72,767 + GFF6167 0.34 -0.9 72,767 + GFF6167 0.34 -0.8 72,767 + GFF6167 0.34 -1.9 72,767 + GFF6167 0.34 +0.3 72,767 + GFF6167 0.34 -1.3 72,977 + GFF6167 0.55 -0.0 72,978 - GFF6167 0.55 -0.3 72,978 - GFF6167 0.55 -0.0 73,058 + GFF6167 0.63 +0.1 73,059 - GFF6167 0.63 +1.2 73,059 - GFF6167 0.63 -0.1 73,088 + GFF6167 0.66 +0.5 73,145 + GFF6167 0.72 -0.0 73,145 + GFF6167 0.72 +3.1
Or see this region's nucleotide sequence