Strain Fitness in Variovorax sp. SCN45 around GFF6150

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6149 and GFF6150 are separated by 21 nucleotidesGFF6150 and GFF6151 are separated by 105 nucleotides GFF6149 - FAD-dependent oxidoreductase, at 53,571 to 54,959 GFF6149 GFF6150 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 54,981 to 56,336 GFF6150 GFF6151 - Transcriptional regulator, LysR family, at 56,442 to 57,404 GFF6151 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 54.025 kb on - strand, within GFF6149at 54.091 kb on - strand, within GFF6149at 54.091 kb on - strand, within GFF6149at 54.244 kb on + strand, within GFF6149at 54.245 kb on - strand, within GFF6149at 54.424 kb on - strand, within GFF6149at 54.426 kb on + strand, within GFF6149at 54.426 kb on + strand, within GFF6149at 54.426 kb on + strand, within GFF6149at 54.426 kb on + strand, within GFF6149at 54.427 kb on - strand, within GFF6149at 54.427 kb on - strand, within GFF6149at 54.427 kb on - strand, within GFF6149at 54.430 kb on - strand, within GFF6149at 54.528 kb on + strand, within GFF6149at 54.528 kb on + strand, within GFF6149at 54.529 kb on - strand, within GFF6149at 54.672 kb on + strand, within GFF6149at 54.672 kb on + strand, within GFF6149at 54.672 kb on + strand, within GFF6149at 54.672 kb on + strand, within GFF6149at 54.672 kb on + strand, within GFF6149at 54.672 kb on + strand, within GFF6149at 54.673 kb on - strand, within GFF6149at 54.673 kb on - strand, within GFF6149at 54.673 kb on - strand, within GFF6149at 54.673 kb on - strand, within GFF6149at 54.714 kb on + strand, within GFF6149at 54.714 kb on + strand, within GFF6149at 54.714 kb on + strand, within GFF6149at 54.715 kb on - strand, within GFF6149at 54.715 kb on - strand, within GFF6149at 54.715 kb on - strand, within GFF6149at 54.715 kb on - strand, within GFF6149at 54.825 kb on + strandat 54.825 kb on + strandat 54.825 kb on + strandat 55.093 kb on + strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.094 kb on - strandat 55.129 kb on + strand, within GFF6150at 55.345 kb on + strand, within GFF6150at 55.346 kb on - strand, within GFF6150at 55.351 kb on + strand, within GFF6150at 55.351 kb on + strand, within GFF6150at 55.375 kb on + strand, within GFF6150at 55.376 kb on - strand, within GFF6150at 55.376 kb on - strand, within GFF6150at 55.376 kb on - strand, within GFF6150at 55.376 kb on - strand, within GFF6150at 55.408 kb on + strand, within GFF6150at 55.408 kb on + strand, within GFF6150at 55.409 kb on - strand, within GFF6150at 55.606 kb on + strand, within GFF6150at 55.852 kb on + strand, within GFF6150at 55.853 kb on - strand, within GFF6150at 55.853 kb on - strand, within GFF6150at 55.853 kb on - strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 56.071 kb on + strand, within GFF6150at 56.071 kb on + strand, within GFF6150at 56.194 kb on + strand, within GFF6150at 56.194 kb on + strand, within GFF6150at 56.195 kb on - strand, within GFF6150at 56.195 kb on - strand, within GFF6150at 56.255 kb on - strandat 56.712 kb on + strand, within GFF6151at 56.712 kb on + strand, within GFF6151at 56.712 kb on + strand, within GFF6151at 56.713 kb on - strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.998 kb on - strand, within GFF6151at 56.998 kb on - strand, within GFF6151at 56.998 kb on - strand, within GFF6151at 57.031 kb on - strand, within GFF6151at 57.121 kb on - strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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54,025 - GFF6149 0.33 -3.2
54,091 - GFF6149 0.37 -0.7
54,091 - GFF6149 0.37 -1.2
54,244 + GFF6149 0.48 -2.1
54,245 - GFF6149 0.49 +0.0
54,424 - GFF6149 0.61 +2.4
54,426 + GFF6149 0.62 +0.3
54,426 + GFF6149 0.62 +1.9
54,426 + GFF6149 0.62 +0.1
54,426 + GFF6149 0.62 +2.7
54,427 - GFF6149 0.62 +1.0
54,427 - GFF6149 0.62 -1.1
54,427 - GFF6149 0.62 +0.3
54,430 - GFF6149 0.62 -0.9
54,528 + GFF6149 0.69 +2.0
54,528 + GFF6149 0.69 +0.7
54,529 - GFF6149 0.69 -3.1
54,672 + GFF6149 0.79 -0.1
54,672 + GFF6149 0.79 +1.9
54,672 + GFF6149 0.79 +0.8
54,672 + GFF6149 0.79 -2.3
54,672 + GFF6149 0.79 +0.8
54,672 + GFF6149 0.79 +0.9
54,673 - GFF6149 0.79 -1.9
54,673 - GFF6149 0.79 -0.6
54,673 - GFF6149 0.79 +0.9
54,673 - GFF6149 0.79 +2.4
54,714 + GFF6149 0.82 -1.1
54,714 + GFF6149 0.82 +3.0
54,714 + GFF6149 0.82 -1.6
54,715 - GFF6149 0.82 +2.5
54,715 - GFF6149 0.82 -2.4
54,715 - GFF6149 0.82 +0.2
54,715 - GFF6149 0.82 +0.7
54,825 + -0.1
54,825 + +0.3
54,825 + -2.4
55,093 + +0.3
55,094 - -3.8
55,094 - -1.0
55,094 - -4.9
55,094 - -0.4
55,094 - -2.3
55,094 - -2.1
55,094 - -4.2
55,094 - -0.9
55,094 - -1.6
55,129 + GFF6150 0.11 -2.7
55,345 + GFF6150 0.27 -1.7
55,346 - GFF6150 0.27 -0.7
55,351 + GFF6150 0.27 -0.4
55,351 + GFF6150 0.27 -0.9
55,375 + GFF6150 0.29 -2.8
55,376 - GFF6150 0.29 -4.1
55,376 - GFF6150 0.29 -3.2
55,376 - GFF6150 0.29 -1.3
55,376 - GFF6150 0.29 -0.4
55,408 + GFF6150 0.31 -4.4
55,408 + GFF6150 0.31 +1.9
55,409 - GFF6150 0.32 -1.9
55,606 + GFF6150 0.46 -1.3
55,852 + GFF6150 0.64 -0.4
55,853 - GFF6150 0.64 -3.8
55,853 - GFF6150 0.64 -2.8
55,853 - GFF6150 0.64 -1.6
55,987 + GFF6150 0.74 -3.2
55,987 + GFF6150 0.74 -1.4
55,987 + GFF6150 0.74 -3.2
55,987 + GFF6150 0.74 -4.1
55,987 + GFF6150 0.74 -0.5
55,987 + GFF6150 0.74 -3.0
55,988 - GFF6150 0.74 -2.2
55,988 - GFF6150 0.74 -2.4
55,988 - GFF6150 0.74 -4.5
55,988 - GFF6150 0.74 -2.7
55,988 - GFF6150 0.74 -2.1
55,988 - GFF6150 0.74 -2.2
55,988 - GFF6150 0.74 -2.7
55,988 - GFF6150 0.74 -0.4
55,988 - GFF6150 0.74 -1.7
56,071 + GFF6150 0.80 -2.1
56,071 + GFF6150 0.80 -1.6
56,194 + GFF6150 0.89 -2.4
56,194 + GFF6150 0.89 -2.0
56,195 - GFF6150 0.90 -3.6
56,195 - GFF6150 0.90 -3.8
56,255 - -1.3
56,712 + GFF6151 0.28 -1.7
56,712 + GFF6151 0.28 -2.1
56,712 + GFF6151 0.28 +0.9
56,713 - GFF6151 0.28 -2.0
56,997 + GFF6151 0.58 -1.2
56,997 + GFF6151 0.58 -3.0
56,997 + GFF6151 0.58 -2.2
56,997 + GFF6151 0.58 -1.7
56,997 + GFF6151 0.58 -1.1
56,997 + GFF6151 0.58 -1.2
56,998 - GFF6151 0.58 -0.7
56,998 - GFF6151 0.58 -1.6
56,998 - GFF6151 0.58 -1.7
57,031 - GFF6151 0.61 -0.4
57,121 - GFF6151 0.71 -1.7
57,306 + GFF6151 0.90 -2.4
57,306 + GFF6151 0.90 -2.6
57,306 + GFF6151 0.90 -0.7
57,306 + GFF6151 0.90 -1.8
57,306 + GFF6151 0.90 +0.9
57,307 - GFF6151 0.90 -2.2
57,307 - GFF6151 0.90 -4.8
57,307 - GFF6151 0.90 -2.5
57,307 - GFF6151 0.90 -2.1
57,307 - GFF6151 0.90 +0.3

Or see this region's nucleotide sequence