Strain Fitness in Variovorax sp. SCN45 around GFF6043

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
102,224	-		GFF6042	0.30	+1.9
102,346	+		GFF6042	0.40	-0.1
102,371	-		GFF6042	0.42	+0.3
102,505	+		GFF6042	0.53	+1.9
102,506	-		GFF6042	0.53	+1.9
102,506	-		GFF6042	0.53	+1.9
102,640	+		GFF6042	0.64	+1.9
102,640	+		GFF6042	0.64	+0.9
102,649	+		GFF6042	0.65	+1.9
102,650	-		GFF6042	0.65	+1.9
102,650	-		GFF6042	0.65	+0.9
102,650	-		GFF6042	0.65	+1.9
102,692	-		GFF6042	0.68	+1.9
102,730	+		GFF6042	0.71	+1.9
102,730	+		GFF6042	0.71	+1.9
102,988	+				+0.9
102,988	+				+1.9
102,988	+				+0.3
102,988	+				+1.9
102,989	-				+1.9
102,989	-				+0.9
103,089	+				+0.3
103,090	-				+0.9
103,090	-				+1.9
103,090	-				+2.6
103,090	-				+2.6
103,150	+				+0.3
103,151	-				+1.9
103,151	-				+0.9
103,151	-				-1.9
103,164	+				+1.9
103,164	+				+0.9
103,164	+				+1.9
103,165	-				+0.5
103,165	-				+1.9
103,165	-				+1.9
103,189	-				+2.4
103,194	+				+0.3
103,194	+				+1.9
103,194	+				+0.9
103,194	+				+1.9
103,194	+				-0.4
103,194	+				+0.9
103,194	+				-0.1
103,194	+				+0.9
103,195	-				+0.4
103,195	-				-0.1
103,195	-				-0.1
103,195	-				+0.8
103,195	-				+0.1
103,195	-				+1.4
103,213	+				-0.7
103,213	+				+0.9
103,214	-				+0.9
103,214	-				+0.9
103,214	-				-1.4
103,214	-				+1.0
103,279	+				+0.3
103,441	+		GFF6043	0.18	+1.9
103,442	-		GFF6043	0.18	-0.4
103,569	-		GFF6043	0.28	-0.2
103,741	+		GFF6043	0.42	-0.8
103,741	+		GFF6043	0.42	-0.8
103,742	-		GFF6043	0.42	-1.8
103,742	-		GFF6043	0.42	-0.0
103,757	+		GFF6043	0.43	-1.4
103,757	+		GFF6043	0.43	-0.0
103,757	+		GFF6043	0.43	+0.9
103,757	+		GFF6043	0.43	+0.8
103,757	+		GFF6043	0.43	-1.1
103,757	+		GFF6043	0.43	+1.6
103,758	-		GFF6043	0.43	-0.1
103,758	-		GFF6043	0.43	+0.2
103,758	-		GFF6043	0.43	-0.0
103,758	-		GFF6043	0.43	-3.7
103,758	-		GFF6043	0.43	+1.3
104,242	+		GFF6043	0.81	-1.6
104,242	+		GFF6043	0.81	-0.7
104,242	+		GFF6043	0.81	-2.2
104,242	+		GFF6043	0.81	+0.1
104,242	+		GFF6043	0.81	-1.3
104,243	-		GFF6043	0.81	+1.0
104,243	-		GFF6043	0.81	+0.5
104,243	-		GFF6043	0.81	+0.3
104,243	-		GFF6043	0.81	-3.0
104,332	+		GFF6043	0.88	-0.4
104,332	+		GFF6043	0.88	-0.1
104,332	+		GFF6043	0.88	+0.3
104,332	+		GFF6043	0.88	-2.5
104,333	-		GFF6043	0.88	-0.9
104,333	-		GFF6043	0.88	+1.7
104,333	-		GFF6043	0.88	-3.3
104,333	-		GFF6043	0.88	+0.2
104,333	-		GFF6043	0.88	-0.1
104,333	-		GFF6043	0.88	-0.4
104,526	+				+1.0
104,526	+				+0.7
104,526	+				-0.6
104,703	+				-0.8
104,703	+				-0.7
104,703	+				+0.9
104,703	+				+3.2
104,703	+				-0.2
104,703	+				+1.9
104,703	+				-2.9
104,703	+				-0.5
104,703	+				-1.3
104,703	+				+2.0
104,703	+				-0.9
104,704	-				-0.2
104,704	-				-1.4
104,704	-				+0.3
104,704	-				+0.3
104,704	-				-1.3
104,805	+		GFF6044	0.15	-2.3
104,805	+		GFF6044	0.15	+0.2
104,806	-		GFF6044	0.15	-2.8
104,806	-		GFF6044	0.15	-0.6
104,806	-		GFF6044	0.15	-0.5
104,806	-		GFF6044	0.15	+0.9
104,806	-		GFF6044	0.15	-0.5
105,123	+		GFF6044	0.32	-1.1
105,124	-		GFF6044	0.32	+2.5
105,229	+		GFF6044	0.38	-0.9
105,229	+		GFF6044	0.38	-2.7
105,229	+		GFF6044	0.38	+0.7
105,229	+		GFF6044	0.38	-0.1
105,229	+		GFF6044	0.38	-0.1
105,230	-		GFF6044	0.38	-0.5
105,230	-		GFF6044	0.38	-1.2
105,230	-		GFF6044	0.38	+0.6
105,309	+		GFF6044	0.42	+0.1
105,309	+		GFF6044	0.42	-0.7