Strain Fitness in Variovorax sp. SCN45 around GFF6029

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6028 and GFF6029 are separated by 28 nucleotidesGFF6029 and GFF6030 are separated by 0 nucleotidesGFF6030 and GFF6031 are separated by 1 nucleotides GFF6028 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 88,590 to 89,654 GFF6028 GFF6029 - BUG/TctC family periplasmic protein, at 89,683 to 90,663 GFF6029 GFF6030 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 90,664 to 91,440 GFF6030 GFF6031 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 91,442 to 92,221 GFF6031 Position (kb) 89 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 88.716 kb on + strand, within GFF6028at 89.022 kb on + strand, within GFF6028at 89.022 kb on + strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.061 kb on + strand, within GFF6028at 89.061 kb on + strand, within GFF6028at 89.062 kb on - strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.383 kb on + strand, within GFF6028at 89.383 kb on + strand, within GFF6028at 89.384 kb on - strand, within GFF6028at 89.418 kb on + strand, within GFF6028at 89.418 kb on + strand, within GFF6028at 89.419 kb on - strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.574 kb on + strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.665 kb on - strandat 89.665 kb on - strandat 89.665 kb on - strandat 89.668 kb on + strandat 89.668 kb on + strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.794 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.993 kb on - strand, within GFF6029at 89.993 kb on - strand, within GFF6029at 90.128 kb on - strand, within GFF6029at 90.157 kb on + strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.244 kb on + strand, within GFF6029at 90.244 kb on + strand, within GFF6029at 90.245 kb on - strand, within GFF6029at 90.245 kb on - strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.270 kb on - strand, within GFF6029at 90.270 kb on - strand, within GFF6029at 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.677 kb on + strandat 90.755 kb on + strand, within GFF6030at 90.755 kb on + strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 90.756 kb on - strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.064 kb on + strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.065 kb on - strand, within GFF6030at 91.464 kb on + strandat 91.465 kb on - strandat 91.465 kb on - strandat 91.465 kb on - strandat 91.530 kb on + strand, within GFF6031at 91.530 kb on + strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031at 91.531 kb on - strand, within GFF6031

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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88,716 + GFF6028 0.12 -3.7
89,022 + GFF6028 0.41 -1.1
89,022 + GFF6028 0.41 -2.6
89,023 - GFF6028 0.41 -1.1
89,023 - GFF6028 0.41 +0.3
89,023 - GFF6028 0.41 +0.9
89,023 - GFF6028 0.41 -1.3
89,061 + GFF6028 0.44 -2.3
89,061 + GFF6028 0.44 -1.5
89,062 - GFF6028 0.44 -2.7
89,084 + GFF6028 0.46 -1.2
89,084 + GFF6028 0.46 -2.4
89,084 + GFF6028 0.46 -3.2
89,338 - GFF6028 0.70 +1.6
89,338 - GFF6028 0.70 -2.8
89,338 - GFF6028 0.70 -1.4
89,338 - GFF6028 0.70 -4.0
89,367 + GFF6028 0.73 -2.3
89,367 + GFF6028 0.73 -2.6
89,367 + GFF6028 0.73 -1.1
89,367 + GFF6028 0.73 -1.1
89,367 + GFF6028 0.73 -1.1
89,367 + GFF6028 0.73 +0.3
89,367 + GFF6028 0.73 -2.2
89,367 + GFF6028 0.73 -2.3
89,367 + GFF6028 0.73 -1.8
89,367 + GFF6028 0.73 -1.1
89,367 + GFF6028 0.73 -4.5
89,367 + GFF6028 0.73 -1.8
89,367 + GFF6028 0.73 -3.6
89,367 + GFF6028 0.73 -2.8
89,368 - GFF6028 0.73 -0.9
89,368 - GFF6028 0.73 -1.3
89,368 - GFF6028 0.73 -2.9
89,368 - GFF6028 0.73 -4.3
89,368 - GFF6028 0.73 -3.1
89,368 - GFF6028 0.73 -3.3
89,368 - GFF6028 0.73 +1.9
89,368 - GFF6028 0.73 -2.1
89,368 - GFF6028 0.73 -2.3
89,383 + GFF6028 0.74 +0.9
89,383 + GFF6028 0.74 -2.2
89,384 - GFF6028 0.75 -3.0
89,418 + GFF6028 0.78 -1.3
89,418 + GFF6028 0.78 -2.7
89,419 - GFF6028 0.78 -0.6
89,529 + GFF6028 0.88 -1.3
89,529 + GFF6028 0.88 -3.8
89,529 + GFF6028 0.88 -1.7
89,529 + GFF6028 0.88 -1.4
89,530 - GFF6028 0.88 +0.9
89,530 - GFF6028 0.88 -1.1
89,530 - GFF6028 0.88 -2.2
89,530 - GFF6028 0.88 -1.7
89,530 - GFF6028 0.88 -1.6
89,530 - GFF6028 0.88 -0.7
89,530 - GFF6028 0.88 -0.9
89,530 - GFF6028 0.88 +0.1
89,530 - GFF6028 0.88 -3.3
89,574 + -4.1
89,575 - +0.9
89,575 - -1.2
89,575 - -0.7
89,575 - -1.3
89,665 - -2.2
89,665 - +0.5
89,665 - -1.9
89,668 + +1.1
89,668 + +0.9
89,669 - +1.1
89,669 - +1.4
89,669 - +0.2
89,669 - +1.1
89,794 + GFF6029 0.11 -0.7
89,992 + GFF6029 0.31 -2.2
89,992 + GFF6029 0.31 -0.6
89,992 + GFF6029 0.31 +0.5
89,992 + GFF6029 0.31 -1.4
89,993 - GFF6029 0.32 +0.3
89,993 - GFF6029 0.32 +1.6
90,128 - GFF6029 0.45 -0.9
90,157 + GFF6029 0.48 -0.6
90,158 - GFF6029 0.48 -1.0
90,158 - GFF6029 0.48 +0.3
90,158 - GFF6029 0.48 +0.7
90,244 + GFF6029 0.57 -0.5
90,244 + GFF6029 0.57 -1.0
90,245 - GFF6029 0.57 -0.4
90,245 - GFF6029 0.57 +1.2
90,269 + GFF6029 0.60 -0.7
90,269 + GFF6029 0.60 -1.0
90,269 + GFF6029 0.60 -0.4
90,269 + GFF6029 0.60 -1.1
90,270 - GFF6029 0.60 -3.3
90,270 - GFF6029 0.60 +0.9
90,622 + +0.1
90,622 + -1.5
90,622 + +1.2
90,622 + +1.2
90,677 + -3.4
90,755 + GFF6030 0.12 -1.7
90,755 + GFF6030 0.12 -3.2
90,756 - GFF6030 0.12 -0.7
90,756 - GFF6030 0.12 -1.6
90,756 - GFF6030 0.12 -0.9
90,756 - GFF6030 0.12 +0.8
91,064 + GFF6030 0.51 +1.5
91,064 + GFF6030 0.51 -0.7
91,064 + GFF6030 0.51 -1.8
91,064 + GFF6030 0.51 -0.8
91,065 - GFF6030 0.52 -2.4
91,065 - GFF6030 0.52 -0.4
91,065 - GFF6030 0.52 -1.4
91,464 + -1.3
91,465 - -1.6
91,465 - -0.7
91,465 - +1.1
91,530 + GFF6031 0.11 -0.6
91,530 + GFF6031 0.11 -1.6
91,531 - GFF6031 0.11 -0.3
91,531 - GFF6031 0.11 -1.8
91,531 - GFF6031 0.11 -2.7
91,531 - GFF6031 0.11 +1.0

Or see this region's nucleotide sequence