Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5827 and GFF5828 overlap by 4 nucleotides GFF5828 and GFF5829 are separated by 12 nucleotides GFF5829 and GFF5830 are separated by 39 nucleotides
GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054
GFF5827
GFF5828 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 4,051 to 4,920
GFF5828
GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201
GFF5829
GFF5830 - Aldehyde dehydrogenase (EC 1.2.1.3), at 6,241 to 7,743
GFF5830
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.306 kb on + strand, within GFF5828 at 4.306 kb on + strand, within GFF5828 at 4.307 kb on - strand, within GFF5828 at 4.586 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.835 kb on + strand at 4.835 kb on + strand at 4.869 kb on - strand at 4.910 kb on + strand at 4.934 kb on + strand at 4.935 kb on - strand at 4.935 kb on - strand at 4.935 kb on - strand at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.090 kb on + strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.091 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.220 kb on - strand, within GFF5829 at 5.264 kb on + strand, within GFF5829 at 5.264 kb on + strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.265 kb on - strand, within GFF5829 at 5.358 kb on - strand, within GFF5829 at 5.390 kb on + strand, within GFF5829 at 5.675 kb on + strand, within GFF5829 at 5.675 kb on + strand, within GFF5829 at 5.676 kb on - strand, within GFF5829 at 5.690 kb on + strand, within GFF5829 at 5.690 kb on + strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.691 kb on - strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.741 kb on + strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.742 kb on - strand, within GFF5829 at 5.810 kb on + strand, within GFF5829 at 5.811 kb on - strand, within GFF5829 at 5.896 kb on + strand, within GFF5829 at 5.897 kb on - strand, within GFF5829 at 5.897 kb on - strand, within GFF5829 at 5.942 kb on + strand, within GFF5829 at 5.942 kb on + strand, within GFF5829 at 5.942 kb on + strand, within GFF5829 at 5.943 kb on - strand, within GFF5829 at 5.943 kb on - strand, within GFF5829 at 5.943 kb on - strand, within GFF5829 at 5.993 kb on + strand, within GFF5829 at 5.994 kb on - strand, within GFF5829 at 5.994 kb on - strand, within GFF5829
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 4,306 + GFF5828 0.29 +1.0 4,306 + GFF5828 0.29 +0.1 4,307 - GFF5828 0.29 +1.6 4,586 + GFF5828 0.61 -1.9 4,778 + GFF5828 0.84 -0.8 4,778 + GFF5828 0.84 -2.6 4,778 + GFF5828 0.84 +0.5 4,778 + GFF5828 0.84 -0.4 4,835 + -2.9 4,835 + -2.0 4,869 - +0.1 4,910 + -2.1 4,934 + -0.5 4,935 - -0.9 4,935 - +1.1 4,935 - -1.6 5,090 + GFF5829 0.12 +0.1 5,090 + GFF5829 0.12 +0.6 5,090 + GFF5829 0.12 -0.3 5,090 + GFF5829 0.12 +2.1 5,090 + GFF5829 0.12 -0.3 5,091 - GFF5829 0.12 -0.4 5,091 - GFF5829 0.12 -0.3 5,091 - GFF5829 0.12 +0.4 5,220 - GFF5829 0.23 +0.0 5,220 - GFF5829 0.23 -1.4 5,220 - GFF5829 0.23 -1.7 5,264 + GFF5829 0.26 +0.1 5,264 + GFF5829 0.26 -2.6 5,265 - GFF5829 0.26 +0.0 5,265 - GFF5829 0.26 +0.6 5,265 - GFF5829 0.26 +0.0 5,265 - GFF5829 0.26 +0.9 5,358 - GFF5829 0.33 -1.4 5,390 + GFF5829 0.36 -0.6 5,675 + GFF5829 0.58 -0.2 5,675 + GFF5829 0.58 -1.1 5,676 - GFF5829 0.59 -1.6 5,690 + GFF5829 0.60 -1.6 5,690 + GFF5829 0.60 +0.5 5,691 - GFF5829 0.60 -1.0 5,691 - GFF5829 0.60 -0.5 5,691 - GFF5829 0.60 -1.9 5,691 - GFF5829 0.60 -0.1 5,691 - GFF5829 0.60 +0.1 5,741 + GFF5829 0.64 -0.9 5,741 + GFF5829 0.64 +0.7 5,741 + GFF5829 0.64 +2.3 5,742 - GFF5829 0.64 +2.1 5,742 - GFF5829 0.64 -0.9 5,742 - GFF5829 0.64 -0.7 5,742 - GFF5829 0.64 +0.6 5,810 + GFF5829 0.69 -1.4 5,811 - GFF5829 0.69 +1.4 5,896 + GFF5829 0.76 +1.1 5,897 - GFF5829 0.76 +0.6 5,897 - GFF5829 0.76 -0.7 5,942 + GFF5829 0.80 +2.5 5,942 + GFF5829 0.80 -0.6 5,942 + GFF5829 0.80 +1.4 5,943 - GFF5829 0.80 -0.2 5,943 - GFF5829 0.80 +2.8 5,943 - GFF5829 0.80 +1.5 5,993 + GFF5829 0.84 +1.1 5,994 - GFF5829 0.84 +0.1 5,994 - GFF5829 0.84 -0.1
Or see this region's nucleotide sequence