Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF568 and GFF569 are separated by 42 nucleotides GFF569 and GFF570 overlap by 4 nucleotides GFF570 and GFF571 are separated by 7 nucleotides GFF571 and GFF572 overlap by 4 nucleotides
GFF568 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 614,570 to 615,667
GFF568
GFF569 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 615,710 to 616,375
GFF569
GFF570 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 616,372 to 617,526
GFF570
GFF571 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 617,534 to 617,998
GFF571
GFF572 - Transcription termination protein NusB, at 617,995 to 618,552
GFF572
Position (kb) 616
617
618 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 615.665 kb on + strand at 615.665 kb on + strand at 615.665 kb on + strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.672 kb on + strand at 615.815 kb on + strand, within GFF569 at 615.816 kb on - strand, within GFF569 at 616.021 kb on - strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.279 kb on - strand, within GFF569 at 616.279 kb on - strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 617.395 kb on + strand, within GFF570 at 617.395 kb on + strand, within GFF570 at 617.396 kb on - strand, within GFF570 at 617.488 kb on + strand at 617.489 kb on - strand at 617.509 kb on + strand at 617.509 kb on + strand at 617.509 kb on + strand at 617.510 kb on - strand at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.864 kb on + strand, within GFF571
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 615,665 + -0.7 615,665 + +0.1 615,665 + -1.0 615,666 - -0.9 615,666 - -1.3 615,666 - -1.5 615,666 - +2.5 615,672 + +2.0 615,815 + GFF569 0.16 -2.6 615,816 - GFF569 0.16 -1.9 616,021 - GFF569 0.47 +0.5 616,127 + GFF569 0.63 -0.8 616,127 + GFF569 0.63 -1.3 616,127 + GFF569 0.63 -1.7 616,127 + GFF569 0.63 +0.2 616,127 + GFF569 0.63 -1.5 616,127 + GFF569 0.63 -0.8 616,127 + GFF569 0.63 +0.5 616,127 + GFF569 0.63 +0.8 616,127 + GFF569 0.63 -0.1 616,127 + GFF569 0.63 +1.8 616,127 + GFF569 0.63 +0.2 616,127 + GFF569 0.63 -0.1 616,127 + GFF569 0.63 -2.6 616,127 + GFF569 0.63 +0.5 616,127 + GFF569 0.63 -1.6 616,128 - GFF569 0.63 +1.5 616,128 - GFF569 0.63 +1.5 616,128 - GFF569 0.63 -0.8 616,278 + GFF569 0.85 -0.1 616,278 + GFF569 0.85 -0.2 616,278 + GFF569 0.85 -0.7 616,279 - GFF569 0.85 -0.8 616,279 - GFF569 0.85 -1.1 616,301 + GFF569 0.89 -0.9 616,301 + GFF569 0.89 -0.1 616,301 + GFF569 0.89 -2.2 616,301 + GFF569 0.89 -1.6 616,301 + GFF569 0.89 -1.4 616,301 + GFF569 0.89 +0.2 616,302 - GFF569 0.89 -1.9 616,302 - GFF569 0.89 +0.2 616,302 - GFF569 0.89 +1.5 616,302 - GFF569 0.89 -1.6 616,302 - GFF569 0.89 -1.9 616,302 - GFF569 0.89 -2.4 616,302 - GFF569 0.89 +0.5 616,302 - GFF569 0.89 -2.2 616,302 - GFF569 0.89 -0.1 616,352 + -0.5 616,352 + -0.6 616,352 + -1.1 616,352 + +0.1 616,352 + +0.3 616,352 + -1.0 616,353 - -1.5 616,353 - +0.9 616,353 - -0.5 616,353 - +0.5 616,353 - -0.1 617,395 + GFF570 0.89 -2.6 617,395 + GFF570 0.89 -2.2 617,396 - GFF570 0.89 -0.5 617,488 + -3.6 617,489 - -0.5 617,509 + -3.5 617,509 + -2.1 617,509 + +1.0 617,510 - -0.1 617,804 + GFF571 0.58 -4.6 617,804 + GFF571 0.58 -1.8 617,804 + GFF571 0.58 -0.1 617,804 + GFF571 0.58 -3.2 617,804 + GFF571 0.58 -2.3 617,804 + GFF571 0.58 +1.7 617,804 + GFF571 0.58 +0.5 617,864 + GFF571 0.71 -3.6
Or see this region's nucleotide sequence