Strain Fitness in Variovorax sp. SCN45 around GFF5655

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
30,718	+		GFF5654	0.42	-0.3
30,718	+		GFF5654	0.42	-0.6
30,718	+		GFF5654	0.42	-1.1
30,719	-		GFF5654	0.42	+1.0
30,719	-		GFF5654	0.42	-0.5
30,719	-		GFF5654	0.42	+1.5
30,838	+		GFF5654	0.51	+0.7
30,838	+		GFF5654	0.51	+1.3
30,838	+		GFF5654	0.51	+1.6
30,839	-		GFF5654	0.51	+1.8
30,839	-		GFF5654	0.51	-0.3
30,839	-		GFF5654	0.51	-0.1
30,839	-		GFF5654	0.51	-1.8
30,895	+		GFF5654	0.55	-0.6
30,895	+		GFF5654	0.55	-0.6
30,895	+		GFF5654	0.55	-1.2
30,895	+		GFF5654	0.55	+1.2
30,895	+		GFF5654	0.55	+0.2
30,896	-		GFF5654	0.55	-0.6
30,896	-		GFF5654	0.55	+1.3
31,641	-				+2.9
31,688	+		GFF5655	0.13	+0.6
31,688	+		GFF5655	0.13	-1.0
31,869	+		GFF5655	0.31	+0.3
31,869	+		GFF5655	0.31	+1.8
31,869	+		GFF5655	0.31	-0.2
31,869	+		GFF5655	0.31	+0.5
31,869	+		GFF5655	0.31	-0.9
31,870	-		GFF5655	0.31	+0.1
31,870	-		GFF5655	0.31	-0.7
31,870	-		GFF5655	0.31	-0.6
31,870	-		GFF5655	0.31	-0.7
31,870	-		GFF5655	0.31	+0.5
31,870	-		GFF5655	0.31	+1.0
32,001	+		GFF5655	0.44	+0.0
32,001	+		GFF5655	0.44	-1.5
32,001	+		GFF5655	0.44	+1.7
32,002	-		GFF5655	0.44	+0.4
32,002	-		GFF5655	0.44	-1.4
32,002	-		GFF5655	0.44	-0.1
32,002	-		GFF5655	0.44	+0.4
32,002	-		GFF5655	0.44	-2.1
32,052	+		GFF5655	0.48	+0.9
32,294	+		GFF5655	0.72	+0.4
32,294	+		GFF5655	0.72	+0.8
32,294	+		GFF5655	0.72	+0.9
32,295	-		GFF5655	0.72	+0.1
32,295	-		GFF5655	0.72	+2.0
32,347	-		GFF5655	0.77	-2.5
32,347	-		GFF5655	0.77	-0.9
32,347	-		GFF5655	0.77	-0.2
32,401	-		GFF5655	0.82	+0.7
32,401	-		GFF5655	0.82	+0.2
32,401	-		GFF5655	0.82	-0.1
32,401	-		GFF5655	0.82	-0.3
32,590	+				-1.4
32,590	+				-2.3
32,591	-				+0.3
32,591	-				-0.6
32,707	+		GFF5656	0.18	-2.0
32,707	+		GFF5656	0.18	-0.8
32,707	+		GFF5656	0.18	-0.9
32,707	+		GFF5656	0.18	-0.5
32,707	+		GFF5656	0.18	+0.4
32,707	+		GFF5656	0.18	-0.3
32,707	+		GFF5656	0.18	-2.6
32,707	+		GFF5656	0.18	+0.2
32,707	+		GFF5656	0.18	-1.2
32,708	-		GFF5656	0.19	+1.5
32,708	-		GFF5656	0.19	+2.0
32,708	-		GFF5656	0.19	-2.4
32,784	+		GFF5656	0.31	-1.7
32,893	+		GFF5656	0.48	-0.9
32,894	-		GFF5656	0.48	+1.9
32,894	-		GFF5656	0.48	-1.0
32,894	-		GFF5656	0.48	-0.4
32,894	-		GFF5656	0.48	+1.0
33,202	+				+1.0
33,202	+				+0.2
33,202	+				-1.6
33,202	+				+0.2
33,203	-				-1.7
33,205	+				-1.7
33,205	+				+0.0
33,205	+				+1.4
33,206	-				-2.0
33,206	-				-0.3
33,206	-				-0.6
33,340	+		GFF5657	0.12	+0.3
33,359	+		GFF5657	0.13	-1.3
33,359	+		GFF5657	0.13	-1.0
33,360	-		GFF5657	0.14	+0.7
33,360	-		GFF5657	0.14	+0.8
33,476	+		GFF5657	0.26	-1.4
33,476	+		GFF5657	0.26	-0.6
33,509	+		GFF5657	0.29	+0.8
33,509	+		GFF5657	0.29	-0.4
33,509	+		GFF5657	0.29	-3.2
33,509	+		GFF5657	0.29	+0.4
33,509	+		GFF5657	0.29	+0.9
33,509	+		GFF5657	0.29	-0.1
33,509	+		GFF5657	0.29	-0.2
33,509	+		GFF5657	0.29	-1.3
33,509	+		GFF5657	0.29	+0.4
33,509	+		GFF5657	0.29	-1.4
33,510	-		GFF5657	0.29	-2.5
33,510	-		GFF5657	0.29	+1.4
33,510	-		GFF5657	0.29	-0.6
33,510	-		GFF5657	0.29	-1.4
33,510	-		GFF5657	0.29	-1.4
33,510	-		GFF5657	0.29	+1.0
33,545	+		GFF5657	0.33	-0.8
33,546	-		GFF5657	0.33	-1.2
33,546	-		GFF5657	0.33	-1.0
33,546	-		GFF5657	0.33	-3.7
33,546	-		GFF5657	0.33	-1.0