Strain Fitness in Variovorax sp. SCN45 around GFF561

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF560 and GFF561 are separated by 24 nucleotidesGFF561 and GFF562 are separated by 36 nucleotidesGFF562 and GFF563 are separated by 20 nucleotides GFF560 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 606,129 to 607,373 GFF560 GFF561 - Ribonucleotide reductase transcriptional regulator NrdR, at 607,398 to 607,841 GFF561 GFF562 - Type IV pilus biogenesis protein PilE, at 607,878 to 608,339 GFF562 GFF563 - Type IV fimbrial biogenesis protein PilY1, at 608,360 to 611,755 GFF563 Position (kb) 607 608Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 607.366 kb on - strandat 607.518 kb on + strand, within GFF561at 607.518 kb on + strand, within GFF561at 607.518 kb on + strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.519 kb on - strand, within GFF561at 607.549 kb on + strand, within GFF561at 607.549 kb on + strand, within GFF561at 607.549 kb on + strand, within GFF561at 607.550 kb on - strand, within GFF561at 607.550 kb on - strand, within GFF561at 607.550 kb on - strand, within GFF561at 607.550 kb on - strand, within GFF561at 607.767 kb on + strand, within GFF561at 607.768 kb on - strand, within GFF561at 607.768 kb on - strand, within GFF561at 607.768 kb on - strand, within GFF561at 607.768 kb on - strand, within GFF561at 607.788 kb on + strand, within GFF561at 607.788 kb on + strand, within GFF561at 607.789 kb on - strand, within GFF561at 607.789 kb on - strand, within GFF561at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.017 kb on + strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.018 kb on - strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.041 kb on + strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.042 kb on - strand, within GFF562at 608.053 kb on + strand, within GFF562at 608.053 kb on + strand, within GFF562at 608.053 kb on + strand, within GFF562at 608.053 kb on + strand, within GFF562at 608.053 kb on + strand, within GFF562at 608.053 kb on + strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.054 kb on - strand, within GFF562at 608.119 kb on + strand, within GFF562at 608.119 kb on + strand, within GFF562at 608.119 kb on + strand, within GFF562at 608.120 kb on - strand, within GFF562at 608.120 kb on - strand, within GFF562at 608.120 kb on - strand, within GFF562at 608.140 kb on + strand, within GFF562at 608.140 kb on + strand, within GFF562at 608.140 kb on + strand, within GFF562at 608.140 kb on + strand, within GFF562at 608.140 kb on + strand, within GFF562at 608.140 kb on + strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.141 kb on - strand, within GFF562at 608.209 kb on + strand, within GFF562at 608.209 kb on + strand, within GFF562at 608.209 kb on + strand, within GFF562at 608.209 kb on + strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.210 kb on - strand, within GFF562at 608.216 kb on + strand, within GFF562at 608.216 kb on + strand, within GFF562at 608.216 kb on + strand, within GFF562at 608.216 kb on + strand, within GFF562at 608.216 kb on + strand, within GFF562at 608.217 kb on - strand, within GFF562at 608.217 kb on - strand, within GFF562at 608.217 kb on - strand, within GFF562at 608.218 kb on + strand, within GFF562at 608.218 kb on + strand, within GFF562at 608.218 kb on + strand, within GFF562at 608.218 kb on + strand, within GFF562at 608.218 kb on + strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.219 kb on - strand, within GFF562at 608.228 kb on - strand, within GFF562at 608.329 kb on + strandat 608.329 kb on + strandat 608.329 kb on + strandat 608.329 kb on + strandat 608.330 kb on - strandat 608.330 kb on - strandat 608.330 kb on - strandat 608.330 kb on - strandat 608.330 kb on - strandat 608.330 kb on - strandat 608.330 kb on - strandat 608.529 kb on + strandat 608.529 kb on + strandat 608.529 kb on + strandat 608.530 kb on - strandat 608.530 kb on - strandat 608.530 kb on - strandat 608.559 kb on + strandat 608.560 kb on - strandat 608.751 kb on + strand, within GFF563at 608.751 kb on + strand, within GFF563at 608.751 kb on + strand, within GFF563at 608.752 kb on - strand, within GFF563at 608.781 kb on + strand, within GFF563at 608.781 kb on + strand, within GFF563at 608.781 kb on + strand, within GFF563at 608.781 kb on + strand, within GFF563at 608.781 kb on + strand, within GFF563at 608.781 kb on + strand, within GFF563at 608.782 kb on - strand, within GFF563at 608.782 kb on - strand, within GFF563at 608.782 kb on - strand, within GFF563at 608.782 kb on - strand, within GFF563at 608.782 kb on - strand, within GFF563at 608.782 kb on - strand, within GFF563at 608.782 kb on - strand, within GFF563

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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607,366 - -2.9
607,518 + GFF561 0.27 -0.6
607,518 + GFF561 0.27 -1.9
607,518 + GFF561 0.27 -3.3
607,519 - GFF561 0.27 -1.3
607,519 - GFF561 0.27 -2.5
607,519 - GFF561 0.27 -1.8
607,519 - GFF561 0.27 -0.0
607,519 - GFF561 0.27 -0.5
607,519 - GFF561 0.27 -3.9
607,519 - GFF561 0.27 -1.9
607,519 - GFF561 0.27 -3.3
607,519 - GFF561 0.27 -2.5
607,519 - GFF561 0.27 -1.9
607,549 + GFF561 0.34 -0.5
607,549 + GFF561 0.34 -2.2
607,549 + GFF561 0.34 -0.6
607,550 - GFF561 0.34 -3.0
607,550 - GFF561 0.34 -3.2
607,550 - GFF561 0.34 -0.3
607,550 - GFF561 0.34 -3.0
607,767 + GFF561 0.83 -1.5
607,768 - GFF561 0.83 -3.2
607,768 - GFF561 0.83 -0.0
607,768 - GFF561 0.83 -1.3
607,768 - GFF561 0.83 -1.6
607,788 + GFF561 0.88 -2.5
607,788 + GFF561 0.88 -3.6
607,789 - GFF561 0.88 -2.5
607,789 - GFF561 0.88 -0.5
608,017 + GFF562 0.30 +0.1
608,017 + GFF562 0.30 +0.9
608,017 + GFF562 0.30 -0.2
608,017 + GFF562 0.30 +3.0
608,017 + GFF562 0.30 +0.1
608,017 + GFF562 0.30 -1.7
608,017 + GFF562 0.30 -0.2
608,017 + GFF562 0.30 +2.8
608,018 - GFF562 0.30 -3.0
608,018 - GFF562 0.30 +1.0
608,018 - GFF562 0.30 -1.7
608,018 - GFF562 0.30 -2.9
608,018 - GFF562 0.30 -0.0
608,018 - GFF562 0.30 +0.3
608,018 - GFF562 0.30 -1.5
608,018 - GFF562 0.30 +0.1
608,018 - GFF562 0.30 +1.3
608,018 - GFF562 0.30 -0.5
608,018 - GFF562 0.30 +1.5
608,018 - GFF562 0.30 -0.2
608,018 - GFF562 0.30 -0.0
608,018 - GFF562 0.30 -0.1
608,018 - GFF562 0.30 -1.8
608,041 + GFF562 0.35 +1.5
608,041 + GFF562 0.35 +0.3
608,041 + GFF562 0.35 +1.5
608,041 + GFF562 0.35 -0.5
608,041 + GFF562 0.35 -0.7
608,041 + GFF562 0.35 -0.0
608,041 + GFF562 0.35 -1.8
608,041 + GFF562 0.35 -1.0
608,041 + GFF562 0.35 -1.3
608,041 + GFF562 0.35 +0.3
608,041 + GFF562 0.35 -0.8
608,041 + GFF562 0.35 -1.3
608,041 + GFF562 0.35 +0.5
608,041 + GFF562 0.35 -2.6
608,041 + GFF562 0.35 -0.6
608,041 + GFF562 0.35 +0.9
608,041 + GFF562 0.35 -0.8
608,041 + GFF562 0.35 +0.8
608,041 + GFF562 0.35 +0.7
608,041 + GFF562 0.35 -2.8
608,041 + GFF562 0.35 +1.0
608,042 - GFF562 0.35 -2.9
608,042 - GFF562 0.35 -0.5
608,042 - GFF562 0.35 -2.5
608,042 - GFF562 0.35 -0.9
608,042 - GFF562 0.35 +0.7
608,042 - GFF562 0.35 +0.4
608,042 - GFF562 0.35 +0.7
608,042 - GFF562 0.35 +0.0
608,042 - GFF562 0.35 +1.0
608,042 - GFF562 0.35 -0.1
608,042 - GFF562 0.35 -1.5
608,042 - GFF562 0.35 +0.1
608,042 - GFF562 0.35 +0.1
608,042 - GFF562 0.35 -0.5
608,042 - GFF562 0.35 +0.9
608,042 - GFF562 0.35 +1.1
608,042 - GFF562 0.35 +1.7
608,042 - GFF562 0.35 -0.3
608,042 - GFF562 0.35 -3.2
608,042 - GFF562 0.35 -0.5
608,042 - GFF562 0.35 +0.2
608,042 - GFF562 0.35 +0.5
608,042 - GFF562 0.35 -1.0
608,042 - GFF562 0.35 -1.3
608,053 + GFF562 0.38 -1.3
608,053 + GFF562 0.38 -1.2
608,053 + GFF562 0.38 -0.6
608,053 + GFF562 0.38 -3.5
608,053 + GFF562 0.38 +0.2
608,053 + GFF562 0.38 -0.6
608,054 - GFF562 0.38 +0.4
608,054 - GFF562 0.38 -0.9
608,054 - GFF562 0.38 +0.3
608,054 - GFF562 0.38 -0.1
608,054 - GFF562 0.38 +0.3
608,054 - GFF562 0.38 -0.0
608,054 - GFF562 0.38 -0.2
608,054 - GFF562 0.38 +0.9
608,119 + GFF562 0.52 +2.5
608,119 + GFF562 0.52 -1.0
608,119 + GFF562 0.52 +2.9
608,120 - GFF562 0.52 +0.1
608,120 - GFF562 0.52 +0.4
608,120 - GFF562 0.52 +0.2
608,140 + GFF562 0.57 +1.1
608,140 + GFF562 0.57 -1.3
608,140 + GFF562 0.57 +0.3
608,140 + GFF562 0.57 -2.5
608,140 + GFF562 0.57 +0.4
608,140 + GFF562 0.57 -1.5
608,141 - GFF562 0.57 -1.3
608,141 - GFF562 0.57 -0.8
608,141 - GFF562 0.57 -1.0
608,141 - GFF562 0.57 -1.2
608,141 - GFF562 0.57 -1.8
608,141 - GFF562 0.57 -0.2
608,141 - GFF562 0.57 -2.4
608,141 - GFF562 0.57 +0.4
608,141 - GFF562 0.57 +1.4
608,141 - GFF562 0.57 +0.0
608,141 - GFF562 0.57 -0.7
608,141 - GFF562 0.57 +1.2
608,209 + GFF562 0.72 -1.4
608,209 + GFF562 0.72 -1.3
608,209 + GFF562 0.72 +0.9
608,209 + GFF562 0.72 -0.3
608,210 - GFF562 0.72 -0.6
608,210 - GFF562 0.72 +3.0
608,210 - GFF562 0.72 -0.9
608,210 - GFF562 0.72 -0.4
608,210 - GFF562 0.72 -1.5
608,210 - GFF562 0.72 -0.6
608,210 - GFF562 0.72 -1.0
608,216 + GFF562 0.73 +1.5
608,216 + GFF562 0.73 -0.9
608,216 + GFF562 0.73 +1.5
608,216 + GFF562 0.73 -1.0
608,216 + GFF562 0.73 -2.6
608,217 - GFF562 0.73 +0.3
608,217 - GFF562 0.73 -0.6
608,217 - GFF562 0.73 -1.8
608,218 + GFF562 0.74 +2.1
608,218 + GFF562 0.74 -1.3
608,218 + GFF562 0.74 -1.3
608,218 + GFF562 0.74 -0.1
608,218 + GFF562 0.74 +0.7
608,219 - GFF562 0.74 -2.5
608,219 - GFF562 0.74 +1.1
608,219 - GFF562 0.74 +0.8
608,219 - GFF562 0.74 +0.2
608,219 - GFF562 0.74 +0.0
608,219 - GFF562 0.74 -0.9
608,219 - GFF562 0.74 -0.0
608,219 - GFF562 0.74 +1.3
608,219 - GFF562 0.74 -1.0
608,219 - GFF562 0.74 -4.0
608,228 - GFF562 0.76 -1.0
608,329 + +1.2
608,329 + +0.8
608,329 + +0.8
608,329 + -1.5
608,330 - -0.4
608,330 - -3.2
608,330 - +0.3
608,330 - -2.0
608,330 - +0.4
608,330 - -1.7
608,330 - -0.3
608,529 + +2.0
608,529 + -1.6
608,529 + -2.4
608,530 - +0.9
608,530 - -0.1
608,530 - +1.5
608,559 + -1.0
608,560 - -0.9
608,751 + GFF563 0.12 -0.8
608,751 + GFF563 0.12 -1.0
608,751 + GFF563 0.12 -0.3
608,752 - GFF563 0.12 +1.3
608,781 + GFF563 0.12 -1.4
608,781 + GFF563 0.12 +0.7
608,781 + GFF563 0.12 -0.0
608,781 + GFF563 0.12 +1.1
608,781 + GFF563 0.12 +1.3
608,781 + GFF563 0.12 +0.1
608,782 - GFF563 0.12 +0.3
608,782 - GFF563 0.12 +0.4
608,782 - GFF563 0.12 -1.0
608,782 - GFF563 0.12 -0.5
608,782 - GFF563 0.12 -0.8
608,782 - GFF563 0.12 +1.1
608,782 - GFF563 0.12 -1.9

Or see this region's nucleotide sequence