Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5592 and GFF5593 overlap by 4 nucleotides GFF5593 and GFF5594 overlap by 4 nucleotides
GFF5592 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 212,709 to 213,767
GFF5592
GFF5593 - no description, at 213,764 to 214,567
GFF5593
GFF5594 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 214,564 to 215,640
GFF5594
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 212.809 kb on - strand at 213.809 kb on + strand at 213.908 kb on + strand, within GFF5593 at 213.908 kb on + strand, within GFF5593 at 213.909 kb on - strand, within GFF5593 at 214.016 kb on + strand, within GFF5593 at 214.017 kb on - strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.115 kb on + strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.116 kb on - strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.448 kb on + strand, within GFF5593 at 214.449 kb on - strand, within GFF5593 at 214.449 kb on - strand, within GFF5593 at 214.449 kb on - strand, within GFF5593 at 214.570 kb on + strand at 214.570 kb on + strand at 214.570 kb on + strand at 214.570 kb on + strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.571 kb on - strand at 214.600 kb on + strand at 214.601 kb on - strand at 214.601 kb on - strand at 214.814 kb on - strand, within GFF5594 at 214.814 kb on - strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.227 kb on + strand, within GFF5594 at 215.228 kb on - strand, within GFF5594 at 215.228 kb on - strand, within GFF5594 at 215.260 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.461 kb on + strand, within GFF5594 at 215.462 kb on - strand, within GFF5594 at 215.462 kb on - strand, within GFF5594 at 215.462 kb on - strand, within GFF5594
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 212,809 - -0.8 213,809 + -1.3 213,908 + GFF5593 0.18 +0.4 213,908 + GFF5593 0.18 +1.2 213,909 - GFF5593 0.18 -1.2 214,016 + GFF5593 0.31 -2.4 214,017 - GFF5593 0.31 +0.8 214,115 + GFF5593 0.44 -1.3 214,115 + GFF5593 0.44 -2.7 214,115 + GFF5593 0.44 -0.1 214,115 + GFF5593 0.44 +0.4 214,115 + GFF5593 0.44 -0.2 214,115 + GFF5593 0.44 -1.2 214,115 + GFF5593 0.44 -2.2 214,116 - GFF5593 0.44 +0.8 214,116 - GFF5593 0.44 +0.6 214,116 - GFF5593 0.44 +0.3 214,116 - GFF5593 0.44 -1.6 214,116 - GFF5593 0.44 +0.3 214,116 - GFF5593 0.44 -1.5 214,116 - GFF5593 0.44 +0.4 214,116 - GFF5593 0.44 -1.2 214,116 - GFF5593 0.44 -0.2 214,116 - GFF5593 0.44 -0.9 214,448 + GFF5593 0.85 -1.2 214,448 + GFF5593 0.85 -2.1 214,448 + GFF5593 0.85 +2.1 214,448 + GFF5593 0.85 -0.7 214,448 + GFF5593 0.85 +0.4 214,448 + GFF5593 0.85 -2.7 214,448 + GFF5593 0.85 -1.8 214,449 - GFF5593 0.85 -0.8 214,449 - GFF5593 0.85 -2.8 214,449 - GFF5593 0.85 -1.9 214,570 + -0.5 214,570 + -2.2 214,570 + +0.7 214,570 + -2.1 214,571 - -2.2 214,571 - +0.9 214,571 - -0.4 214,571 - -0.4 214,571 - -2.0 214,571 - -1.6 214,600 + +1.0 214,601 - -0.7 214,601 - +1.4 214,814 - GFF5594 0.23 -2.1 214,814 - GFF5594 0.23 -0.5 215,227 + GFF5594 0.62 -2.4 215,227 + GFF5594 0.62 -3.1 215,227 + GFF5594 0.62 -0.0 215,227 + GFF5594 0.62 +1.7 215,227 + GFF5594 0.62 +0.3 215,227 + GFF5594 0.62 -1.8 215,228 - GFF5594 0.62 -0.8 215,228 - GFF5594 0.62 +1.5 215,260 + GFF5594 0.65 -0.1 215,461 + GFF5594 0.83 -0.1 215,461 + GFF5594 0.83 -0.8 215,461 + GFF5594 0.83 -0.0 215,461 + GFF5594 0.83 -0.2 215,462 - GFF5594 0.83 -2.1 215,462 - GFF5594 0.83 -3.4 215,462 - GFF5594 0.83 -1.2
Or see this region's nucleotide sequence