Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5545 and GFF5546 are separated by 45 nucleotides GFF5546 and GFF5547 overlap by 4 nucleotides GFF5547 and GFF5548 are separated by 14 nucleotides
GFF5545 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 173,088 to 173,771
GFF5545
GFF5546 - Lactam utilization protein LamB, at 173,817 to 174,584
GFF5546
GFF5547 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 174,581 to 176,173
GFF5547
GFF5548 - Urea carboxylase (EC 6.3.4.6) without Allophanate hydrolase 2 domains, at 176,188 to 177,927
GFF5548
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.631 kb on + strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 174.009 kb on + strand, within GFF5546 at 174.010 kb on - strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.082 kb on - strand, within GFF5546 at 174.082 kb on - strand, within GFF5546 at 174.082 kb on - strand, within GFF5546 at 174.136 kb on - strand, within GFF5546 at 174.136 kb on - strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.325 kb on - strand, within GFF5546 at 174.325 kb on - strand, within GFF5546 at 174.325 kb on - strand, within GFF5546 at 174.843 kb on - strand, within GFF5547 at 174.926 kb on + strand, within GFF5547 at 174.926 kb on + strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.965 kb on + strand, within GFF5547 at 174.965 kb on + strand, within GFF5547 at 174.966 kb on - strand, within GFF5547 at 174.966 kb on - strand, within GFF5547 at 174.966 kb on - strand, within GFF5547 at 175.070 kb on + strand, within GFF5547 at 175.071 kb on - strand, within GFF5547 at 175.439 kb on + strand, within GFF5547 at 175.440 kb on - strand, within GFF5547 at 175.440 kb on - strand, within GFF5547 at 175.440 kb on - strand, within GFF5547 at 175.582 kb on - strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.619 kb on + strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.620 kb on - strand, within GFF5547 at 175.783 kb on + strand, within GFF5547 at 175.783 kb on + strand, within GFF5547 at 175.784 kb on - strand, within GFF5547 at 175.784 kb on - strand, within GFF5547 at 176.061 kb on - strand at 176.254 kb on + strand at 176.254 kb on + strand at 176.255 kb on - strand at 176.255 kb on - strand at 176.278 kb on + strand at 176.329 kb on + strand at 176.329 kb on + strand at 176.329 kb on + strand at 176.330 kb on - strand at 176.330 kb on - strand at 176.330 kb on - strand at 176.330 kb on - strand at 176.330 kb on - strand at 176.358 kb on + strand at 176.359 kb on - strand at 176.359 kb on - strand at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.362 kb on + strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.363 kb on - strand, within GFF5548 at 176.429 kb on - strand, within GFF5548 at 176.725 kb on + strand, within GFF5548 at 176.725 kb on + strand, within GFF5548 at 176.725 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.776 kb on + strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.777 kb on - strand, within GFF5548 at 176.986 kb on + strand, within GFF5548 at 176.987 kb on - strand, within GFF5548 at 176.987 kb on - strand, within GFF5548 at 176.987 kb on - strand, within GFF5548 at 176.988 kb on + strand, within GFF5548 at 176.989 kb on - strand, within GFF5548 at 176.989 kb on - strand, within GFF5548 at 177.159 kb on + strand, within GFF5548
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 173,631 + GFF5545 0.79 -1.8 173,632 - GFF5545 0.80 -1.7 173,632 - GFF5545 0.80 +0.1 173,632 - GFF5545 0.80 +1.4 173,632 - GFF5545 0.80 -1.3 173,632 - GFF5545 0.80 +0.9 174,009 + GFF5546 0.25 -1.0 174,010 - GFF5546 0.25 +0.5 174,081 + GFF5546 0.34 -2.1 174,081 + GFF5546 0.34 -1.6 174,081 + GFF5546 0.34 +1.0 174,081 + GFF5546 0.34 +2.3 174,082 - GFF5546 0.35 -1.5 174,082 - GFF5546 0.35 +1.1 174,082 - GFF5546 0.35 -0.3 174,136 - GFF5546 0.42 +0.6 174,136 - GFF5546 0.42 +2.6 174,159 + GFF5546 0.45 -0.5 174,159 + GFF5546 0.45 +1.0 174,159 + GFF5546 0.45 +1.5 174,159 + GFF5546 0.45 -1.1 174,159 + GFF5546 0.45 -0.0 174,159 + GFF5546 0.45 +0.7 174,159 + GFF5546 0.45 -0.3 174,159 + GFF5546 0.45 +1.1 174,159 + GFF5546 0.45 -0.4 174,159 + GFF5546 0.45 -1.0 174,160 - GFF5546 0.45 +3.1 174,160 - GFF5546 0.45 +0.7 174,160 - GFF5546 0.45 +1.0 174,160 - GFF5546 0.45 +2.0 174,160 - GFF5546 0.45 +1.0 174,325 - GFF5546 0.66 -0.0 174,325 - GFF5546 0.66 +0.2 174,325 - GFF5546 0.66 -2.5 174,843 - GFF5547 0.16 -1.4 174,926 + GFF5547 0.22 -0.6 174,926 + GFF5547 0.22 -0.5 174,927 - GFF5547 0.22 -1.2 174,927 - GFF5547 0.22 -0.4 174,927 - GFF5547 0.22 -1.3 174,927 - GFF5547 0.22 -0.6 174,965 + GFF5547 0.24 -3.4 174,965 + GFF5547 0.24 -3.6 174,966 - GFF5547 0.24 -1.7 174,966 - GFF5547 0.24 +0.0 174,966 - GFF5547 0.24 -0.7 175,070 + GFF5547 0.31 -3.7 175,071 - GFF5547 0.31 -0.5 175,439 + GFF5547 0.54 -0.2 175,440 - GFF5547 0.54 -1.2 175,440 - GFF5547 0.54 -3.2 175,440 - GFF5547 0.54 -1.8 175,582 - GFF5547 0.63 -1.7 175,619 + GFF5547 0.65 +0.0 175,619 + GFF5547 0.65 -1.1 175,619 + GFF5547 0.65 -2.5 175,619 + GFF5547 0.65 -0.3 175,619 + GFF5547 0.65 +0.4 175,619 + GFF5547 0.65 -1.3 175,619 + GFF5547 0.65 +0.1 175,619 + GFF5547 0.65 -1.8 175,619 + GFF5547 0.65 -1.1 175,619 + GFF5547 0.65 -0.2 175,620 - GFF5547 0.65 -1.3 175,620 - GFF5547 0.65 +0.5 175,620 - GFF5547 0.65 -0.8 175,620 - GFF5547 0.65 -1.1 175,620 - GFF5547 0.65 +0.1 175,620 - GFF5547 0.65 -0.5 175,620 - GFF5547 0.65 +1.9 175,620 - GFF5547 0.65 +0.3 175,620 - GFF5547 0.65 -1.6 175,620 - GFF5547 0.65 -1.0 175,620 - GFF5547 0.65 -1.3 175,620 - GFF5547 0.65 +0.7 175,620 - GFF5547 0.65 -0.9 175,783 + GFF5547 0.75 -1.4 175,783 + GFF5547 0.75 -0.7 175,784 - GFF5547 0.76 -2.3 175,784 - GFF5547 0.76 -1.3 176,061 - +2.3 176,254 + +0.8 176,254 + +2.3 176,255 - +2.3 176,255 - -0.6 176,278 + -1.6 176,329 + +0.5 176,329 + -2.7 176,329 + -0.2 176,330 - -0.7 176,330 - -0.4 176,330 - -2.4 176,330 - -1.4 176,330 - +0.8 176,358 + -0.1 176,359 - +1.0 176,359 - -1.7 176,362 + GFF5548 0.10 -0.2 176,362 + GFF5548 0.10 -1.2 176,362 + GFF5548 0.10 -1.6 176,362 + GFF5548 0.10 -0.7 176,362 + GFF5548 0.10 -1.3 176,362 + GFF5548 0.10 -0.1 176,362 + GFF5548 0.10 +0.5 176,362 + GFF5548 0.10 -1.5 176,362 + GFF5548 0.10 +0.7 176,362 + GFF5548 0.10 -0.9 176,362 + GFF5548 0.10 -1.0 176,362 + GFF5548 0.10 -0.2 176,362 + GFF5548 0.10 -1.4 176,362 + GFF5548 0.10 -1.6 176,362 + GFF5548 0.10 -1.8 176,362 + GFF5548 0.10 -1.3 176,362 + GFF5548 0.10 +0.9 176,363 - GFF5548 0.10 -1.3 176,363 - GFF5548 0.10 +1.3 176,363 - GFF5548 0.10 -3.3 176,363 - GFF5548 0.10 -3.2 176,363 - GFF5548 0.10 -1.3 176,363 - GFF5548 0.10 -1.4 176,363 - GFF5548 0.10 +0.8 176,363 - GFF5548 0.10 +1.1 176,363 - GFF5548 0.10 -1.2 176,363 - GFF5548 0.10 -2.1 176,363 - GFF5548 0.10 -1.0 176,363 - GFF5548 0.10 -2.8 176,363 - GFF5548 0.10 -1.5 176,363 - GFF5548 0.10 +0.6 176,363 - GFF5548 0.10 -1.3 176,363 - GFF5548 0.10 -1.3 176,363 - GFF5548 0.10 -2.0 176,363 - GFF5548 0.10 +0.8 176,363 - GFF5548 0.10 -1.5 176,363 - GFF5548 0.10 +0.4 176,363 - GFF5548 0.10 -0.0 176,363 - GFF5548 0.10 -0.2 176,363 - GFF5548 0.10 -0.5 176,429 - GFF5548 0.14 +0.2 176,725 + GFF5548 0.31 +0.8 176,725 + GFF5548 0.31 -3.0 176,725 + GFF5548 0.31 -1.8 176,776 + GFF5548 0.34 -1.2 176,776 + GFF5548 0.34 -0.2 176,776 + GFF5548 0.34 -2.2 176,776 + GFF5548 0.34 -1.0 176,776 + GFF5548 0.34 +0.9 176,776 + GFF5548 0.34 -1.7 176,776 + GFF5548 0.34 -1.0 176,776 + GFF5548 0.34 +0.5 176,776 + GFF5548 0.34 -1.9 176,776 + GFF5548 0.34 -3.0 176,776 + GFF5548 0.34 -0.2 176,776 + GFF5548 0.34 -1.3 176,776 + GFF5548 0.34 -0.8 176,776 + GFF5548 0.34 +3.3 176,776 + GFF5548 0.34 -1.2 176,776 + GFF5548 0.34 -2.1 176,776 + GFF5548 0.34 -1.4 176,776 + GFF5548 0.34 +1.1 176,777 - GFF5548 0.34 -1.4 176,777 - GFF5548 0.34 -1.6 176,777 - GFF5548 0.34 +0.2 176,777 - GFF5548 0.34 -3.0 176,777 - GFF5548 0.34 +0.4 176,777 - GFF5548 0.34 +0.8 176,777 - GFF5548 0.34 +0.2 176,777 - GFF5548 0.34 +0.7 176,777 - GFF5548 0.34 +0.3 176,777 - GFF5548 0.34 -1.2 176,777 - GFF5548 0.34 -1.5 176,777 - GFF5548 0.34 -0.5 176,777 - GFF5548 0.34 -2.7 176,777 - GFF5548 0.34 -1.3 176,986 + GFF5548 0.46 -1.9 176,987 - GFF5548 0.46 -1.7 176,987 - GFF5548 0.46 +0.2 176,987 - GFF5548 0.46 -0.4 176,988 + GFF5548 0.46 -1.7 176,989 - GFF5548 0.46 -0.7 176,989 - GFF5548 0.46 -0.3 177,159 + GFF5548 0.56 +0.5
Or see this region's nucleotide sequence