Strain Fitness in Variovorax sp. SCN45 around GFF5516

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
146,336	+		GFF5515	0.49	-2.2
146,336	+		GFF5515	0.49	+0.3
146,336	+		GFF5515	0.49	-0.9
146,336	+		GFF5515	0.49	-0.2
146,336	+		GFF5515	0.49	+0.9
146,336	+		GFF5515	0.49	+0.3
146,336	+		GFF5515	0.49	-0.1
146,336	+		GFF5515	0.49	-0.9
146,336	+		GFF5515	0.49	-0.1
146,336	+		GFF5515	0.49	-1.1
146,336	+		GFF5515	0.49	+1.1
146,336	+		GFF5515	0.49	-0.1
146,336	+		GFF5515	0.49	-0.0
146,336	+		GFF5515	0.49	+0.7
146,336	+		GFF5515	0.49	+0.8
146,336	+		GFF5515	0.49	-0.5
146,337	-		GFF5515	0.49	+1.5
146,337	-		GFF5515	0.49	+0.7
146,337	-		GFF5515	0.49	+1.7
146,337	-		GFF5515	0.49	-0.1
146,337	-		GFF5515	0.49	-0.6
146,337	-		GFF5515	0.49	+1.6
146,337	-		GFF5515	0.49	-0.9
146,337	-		GFF5515	0.49	-2.7
146,337	-		GFF5515	0.49	+0.8
146,337	-		GFF5515	0.49	-2.7
146,337	-		GFF5515	0.49	-2.5
146,337	-		GFF5515	0.49	+0.4
146,337	-		GFF5515	0.49	+3.5
146,337	-		GFF5515	0.49	-1.3
146,337	-		GFF5515	0.49	-1.1
146,337	-		GFF5515	0.49	+0.3
146,337	-		GFF5515	0.49	-0.5
146,337	-		GFF5515	0.49	+0.6
146,438	+		GFF5515	0.56	-0.8
146,438	+		GFF5515	0.56	+1.3
146,438	+		GFF5515	0.56	+1.0
146,438	+		GFF5515	0.56	-1.9
146,439	-		GFF5515	0.56	-0.3
146,439	-		GFF5515	0.56	+0.5
146,439	-		GFF5515	0.56	+0.3
146,439	-		GFF5515	0.56	-1.0
146,439	-		GFF5515	0.56	-1.8
146,439	-		GFF5515	0.56	-2.9
146,439	-		GFF5515	0.56	+1.5
146,439	-		GFF5515	0.56	+0.6
146,439	-		GFF5515	0.56	-2.2
146,439	-		GFF5515	0.56	-2.9
146,439	-		GFF5515	0.56	+0.7
146,453	+		GFF5515	0.57	-2.2
146,564	+		GFF5515	0.64	-1.0
146,564	+		GFF5515	0.64	-1.0
146,564	+		GFF5515	0.64	+0.1
146,564	+		GFF5515	0.64	+1.8
146,564	+		GFF5515	0.64	-0.9
146,564	+		GFF5515	0.64	-2.1
146,564	+		GFF5515	0.64	-1.5
146,564	+		GFF5515	0.64	-2.9
146,565	-		GFF5515	0.64	+1.6
146,565	-		GFF5515	0.64	+1.6
146,565	-		GFF5515	0.64	+3.0
146,565	-		GFF5515	0.64	-0.2
146,565	-		GFF5515	0.64	-0.3
146,573	+		GFF5515	0.64	-0.5
146,574	-		GFF5515	0.64	-1.8
146,594	+		GFF5515	0.66	-2.0
146,594	+		GFF5515	0.66	+0.7
146,594	+		GFF5515	0.66	+3.4
146,595	-		GFF5515	0.66	-1.2
146,603	+		GFF5515	0.66	-0.4
146,603	+		GFF5515	0.66	-0.5
146,603	+		GFF5515	0.66	-2.1
146,603	+		GFF5515	0.66	-2.0
146,603	+		GFF5515	0.66	-0.2
146,603	+		GFF5515	0.66	-1.9
146,604	-		GFF5515	0.66	+0.8
146,604	-		GFF5515	0.66	-1.2
146,604	-		GFF5515	0.66	-0.5
146,604	-		GFF5515	0.66	-1.6
146,604	-		GFF5515	0.66	+0.1
146,604	-		GFF5515	0.66	-1.6
146,604	-		GFF5515	0.66	+2.3
146,708	+		GFF5515	0.73	+0.1
146,708	+		GFF5515	0.73	+0.7
146,708	+		GFF5515	0.73	-0.5
146,708	+		GFF5515	0.73	-0.3
146,708	+		GFF5515	0.73	+2.8
146,708	+		GFF5515	0.73	-1.4
146,708	+		GFF5515	0.73	+0.1
146,708	+		GFF5515	0.73	+0.7
146,708	+		GFF5515	0.73	+0.5
146,708	+		GFF5515	0.73	-0.7
146,708	+		GFF5515	0.73	-1.1
146,708	+		GFF5515	0.73	-1.4
146,708	+		GFF5515	0.73	+0.5
146,708	+		GFF5515	0.73	-1.8
146,708	+		GFF5515	0.73	-2.0
146,708	+		GFF5515	0.73	-3.2
146,709	-		GFF5515	0.73	-2.1
146,709	-		GFF5515	0.73	-0.0
146,709	-		GFF5515	0.73	-0.9
146,709	-		GFF5515	0.73	+0.7
146,709	-		GFF5515	0.73	-0.8
146,709	-		GFF5515	0.73	-2.6
146,709	-		GFF5515	0.73	-2.3
146,709	-		GFF5515	0.73	-0.9
146,709	-		GFF5515	0.73	-0.2
146,709	-		GFF5515	0.73	+0.3
146,709	-		GFF5515	0.73	-0.3
146,709	-		GFF5515	0.73	+1.7
146,738	+		GFF5515	0.75	+0.9
146,738	+		GFF5515	0.75	+0.4
146,738	+		GFF5515	0.75	-0.3
146,738	+		GFF5515	0.75	+1.1
146,738	+		GFF5515	0.75	+1.5
146,738	+		GFF5515	0.75	-0.3
146,738	+		GFF5515	0.75	+1.3
146,739	-		GFF5515	0.75	-0.7
146,739	-		GFF5515	0.75	-0.9
146,739	-		GFF5515	0.75	-0.2
146,739	-		GFF5515	0.75	-0.9
146,739	-		GFF5515	0.75	-0.3
146,739	-		GFF5515	0.75	+1.7
146,739	-		GFF5515	0.75	+0.8
146,739	-		GFF5515	0.75	+0.4
146,739	-		GFF5515	0.75	-0.7
146,739	-		GFF5515	0.75	-2.0
146,739	-		GFF5515	0.75	-0.0
146,843	+		GFF5515	0.81	-0.2
146,843	+		GFF5515	0.81	-2.4
146,844	-		GFF5515	0.81	+0.1
146,844	-		GFF5515	0.81	-0.0
146,844	-		GFF5515	0.81	-0.3
146,844	-		GFF5515	0.81	+0.3
146,844	-		GFF5515	0.81	+2.7
146,844	-		GFF5515	0.81	+0.9
146,852	+		GFF5515	0.82	+0.1
146,852	+		GFF5515	0.82	+0.7
146,852	+		GFF5515	0.82	+0.4
146,852	+		GFF5515	0.82	+0.7
146,852	+		GFF5515	0.82	-2.2
146,852	+		GFF5515	0.82	-2.0
146,852	+		GFF5515	0.82	-2.0
146,852	+		GFF5515	0.82	-1.9
146,852	+		GFF5515	0.82	+0.2
146,852	+		GFF5515	0.82	-0.3
146,852	+		GFF5515	0.82	-1.0
146,852	+		GFF5515	0.82	+0.0
146,852	+		GFF5515	0.82	+0.4
146,852	+		GFF5515	0.82	-0.5
146,852	+		GFF5515	0.82	+1.0
146,852	+		GFF5515	0.82	+1.4
146,852	+		GFF5515	0.82	-0.3
146,852	+		GFF5515	0.82	-1.2
146,852	+		GFF5515	0.82	+0.2
146,853	+		GFF5515	0.82	-0.9
146,853	-		GFF5515	0.82	-0.4
146,853	-		GFF5515	0.82	-1.4
146,853	-		GFF5515	0.82	-1.9
146,853	-		GFF5515	0.82	-0.6
146,853	-		GFF5515	0.82	+1.3
146,853	-		GFF5515	0.82	-1.6
146,853	-		GFF5515	0.82	-2.7
146,853	-		GFF5515	0.82	+0.7
146,853	-		GFF5515	0.82	+0.2
147,211	+				+0.9
147,258	-				-0.6
147,270	+				+0.9
147,270	+				-0.0
147,271	-				+0.0
147,271	-				-0.0
147,271	-				-2.0
147,280	+				-1.4
147,280	+				-1.8
147,280	+				-3.3
147,280	+				+0.2
147,280	+				-1.0
147,280	+				-2.0
147,280	+				-0.5
147,281	-				-1.2
147,281	-				-0.5
147,281	-				+0.1
147,281	-				-2.1
147,281	-				-1.4
147,281	-				+3.0
147,281	-				+3.1
147,386	+				-1.0
147,386	+				-0.0
147,386	+				+0.7
147,386	+				-2.5
147,386	+				-2.2
147,386	+				+1.9
147,387	-				+0.9
147,387	-				+1.1
147,387	-				-0.6
147,387	-				-0.3
147,387	-				-0.3
147,773	+		GFF5516	0.33	-2.5
147,773	+		GFF5516	0.33	+0.3
147,773	+		GFF5516	0.33	+2.8
147,773	+		GFF5516	0.33	-2.4
147,773	+		GFF5516	0.33	-0.2
147,773	+		GFF5516	0.33	+0.6
147,773	+		GFF5516	0.33	+0.2
147,774	-		GFF5516	0.33	+0.6
147,774	-		GFF5516	0.33	+2.7
147,774	-		GFF5516	0.33	-0.6
147,774	-		GFF5516	0.33	-0.0
147,774	-		GFF5516	0.33	-0.1
147,774	-		GFF5516	0.33	-0.9
147,774	-		GFF5516	0.33	-1.2
147,774	-		GFF5516	0.33	+0.8
147,774	-		GFF5516	0.33	-2.2
147,774	-		GFF5516	0.33	-0.7
147,774	-		GFF5516	0.33	+0.3
147,923	+		GFF5516	0.43	-2.4
147,923	+		GFF5516	0.43	+0.7
147,923	+		GFF5516	0.43	-0.5
147,923	+		GFF5516	0.43	-0.4
147,923	+		GFF5516	0.43	-1.5
147,923	+		GFF5516	0.43	-0.2
147,923	+		GFF5516	0.43	-2.6
147,923	+		GFF5516	0.43	-0.6
147,923	+		GFF5516	0.43	+0.4
147,923	+		GFF5516	0.43	-2.4
147,923	+		GFF5516	0.43	+1.6
147,923	+		GFF5516	0.43	-0.5
147,923	+		GFF5516	0.43	+0.4
147,923	+		GFF5516	0.43	-2.8
147,923	+		GFF5516	0.43	+0.7
147,924	-		GFF5516	0.43	-0.5
147,924	-		GFF5516	0.43	+3.3
147,924	-		GFF5516	0.43	+0.8
147,924	-		GFF5516	0.43	+0.0
147,924	-		GFF5516	0.43	-0.3
147,924	-		GFF5516	0.43	-2.7
147,924	-		GFF5516	0.43	+0.2
147,924	-		GFF5516	0.43	+1.9
147,924	-		GFF5516	0.43	+1.2
147,924	-		GFF5516	0.43	-3.1
147,924	-		GFF5516	0.43	-1.1
147,941	+		GFF5516	0.45	-0.3
147,941	+		GFF5516	0.45	+0.1
147,941	+		GFF5516	0.45	+2.4
147,942	-		GFF5516	0.45	-0.4
147,942	-		GFF5516	0.45	+0.2
147,942	-		GFF5516	0.45	+0.4
147,942	-		GFF5516	0.45	+1.2
147,942	-		GFF5516	0.45	-1.7
147,942	-		GFF5516	0.45	-0.2
147,942	-		GFF5516	0.45	+0.3
148,109	+		GFF5516	0.56	-0.1
148,109	+		GFF5516	0.56	+0.5
148,109	+		GFF5516	0.56	-2.4
148,109	+		GFF5516	0.56	+1.0
148,109	+		GFF5516	0.56	+1.5
148,109	+		GFF5516	0.56	+0.2
148,109	+		GFF5516	0.56	-1.0
148,109	+		GFF5516	0.56	+1.2
148,109	+		GFF5516	0.56	+1.2
148,110	-		GFF5516	0.56	+2.3
148,110	-		GFF5516	0.56	-1.6
148,110	-		GFF5516	0.56	-0.5
148,110	-		GFF5516	0.56	-1.1
148,110	-		GFF5516	0.56	-2.3
148,110	-		GFF5516	0.56	-1.7
148,110	-		GFF5516	0.56	-0.9
148,110	-		GFF5516	0.56	+1.1
148,110	-		GFF5516	0.56	+0.2
148,110	-		GFF5516	0.56	+0.0
148,110	-		GFF5516	0.56	-1.2
148,110	-		GFF5516	0.56	-2.6
148,110	-		GFF5516	0.56	-2.5
148,110	-		GFF5516	0.56	+0.9
148,202	+		GFF5516	0.63	-0.9
148,202	+		GFF5516	0.63	-1.6
148,202	+		GFF5516	0.63	-0.1
148,202	+		GFF5516	0.63	-2.1
148,202	+		GFF5516	0.63	-2.4
148,202	+		GFF5516	0.63	-1.7
148,202	+		GFF5516	0.63	+0.8
148,202	+		GFF5516	0.63	-1.2
148,202	+		GFF5516	0.63	-0.9
148,202	+		GFF5516	0.63	-2.9
148,203	-		GFF5516	0.63	+1.2
148,203	-		GFF5516	0.63	+0.3
148,203	-		GFF5516	0.63	+0.5
148,203	-		GFF5516	0.63	+2.6
148,203	-		GFF5516	0.63	+1.6
148,203	-		GFF5516	0.63	-0.0
148,203	-		GFF5516	0.63	-1.6
148,379	+		GFF5516	0.75	+0.6
148,379	+		GFF5516	0.75	-0.0
148,379	+		GFF5516	0.75	-1.1
148,379	+		GFF5516	0.75	-3.2
148,379	+		GFF5516	0.75	-1.6
148,379	+		GFF5516	0.75	+0.1
148,379	+		GFF5516	0.75	-2.5
148,379	+		GFF5516	0.75	+0.4
148,379	+		GFF5516	0.75	+0.6
148,379	+		GFF5516	0.75	+2.3
148,379	+		GFF5516	0.75	+0.6
148,379	+		GFF5516	0.75	-0.2
148,379	+		GFF5516	0.75	+0.0
148,379	+		GFF5516	0.75	-2.4
148,379	+		GFF5516	0.75	+1.5
148,379	+		GFF5516	0.75	-1.0
148,379	+		GFF5516	0.75	-1.3
148,380	-		GFF5516	0.75	-0.7
148,380	-		GFF5516	0.75	+1.0
148,380	-		GFF5516	0.75	-0.7
148,380	-		GFF5516	0.75	-3.0
148,380	-		GFF5516	0.75	+0.7
148,380	-		GFF5516	0.75	-0.7
148,380	-		GFF5516	0.75	-1.5
148,380	-		GFF5516	0.75	+0.3
148,380	-		GFF5516	0.75	-3.8
148,380	-		GFF5516	0.75	+0.1
148,380	-		GFF5516	0.75	+0.0
148,380	-		GFF5516	0.75	-0.9
148,380	-		GFF5516	0.75	+1.0
148,424	+		GFF5516	0.78	+1.3
148,424	+		GFF5516	0.78	-3.2
148,424	+		GFF5516	0.78	-2.0
148,424	+		GFF5516	0.78	+0.3
148,424	+		GFF5516	0.78	+0.9
148,424	+		GFF5516	0.78	+0.9
148,424	+		GFF5516	0.78	-0.3
148,425	-		GFF5516	0.78	+0.4
148,425	-		GFF5516	0.78	+0.2
148,425	-		GFF5516	0.78	-0.2
148,425	-		GFF5516	0.78	-2.6
148,445	+		GFF5516	0.79	+0.6
148,445	+		GFF5516	0.79	-0.5
148,445	+		GFF5516	0.79	-0.3
148,445	+		GFF5516	0.79	+1.7
148,445	+		GFF5516	0.79	+0.7
148,445	+		GFF5516	0.79	+1.7
148,445	+		GFF5516	0.79	+1.1
148,445	+		GFF5516	0.79	-0.2
148,445	+		GFF5516	0.79	-0.1
148,445	+		GFF5516	0.79	-0.9
148,445	+		GFF5516	0.79	-0.0
148,446	-		GFF5516	0.80	+0.7
148,446	-		GFF5516	0.80	+0.1
148,446	-		GFF5516	0.80	+0.3
148,475	+		GFF5516	0.82	+3.0
148,475	+		GFF5516	0.82	+0.7
148,475	+		GFF5516	0.82	-0.8
148,475	+		GFF5516	0.82	-0.7
148,475	+		GFF5516	0.82	-0.0
148,475	+		GFF5516	0.82	-0.3
148,475	+		GFF5516	0.82	-1.7
148,475	+		GFF5516	0.82	+1.3
148,475	+		GFF5516	0.82	-2.3
148,475	+		GFF5516	0.82	+0.9
148,475	+		GFF5516	0.82	-0.5
148,475	+		GFF5516	0.82	-0.3
148,475	+		GFF5516	0.82	-1.4
148,475	+		GFF5516	0.82	-3.7
148,475	+		GFF5516	0.82	-0.6
148,475	+		GFF5516	0.82	-1.2
148,475	+		GFF5516	0.82	-1.3
148,475	+		GFF5516	0.82	-0.5
148,475	+		GFF5516	0.82	+1.7
148,475	+		GFF5516	0.82	-0.3
148,475	+		GFF5516	0.82	+0.9
148,475	+		GFF5516	0.82	-0.9
148,476	-		GFF5516	0.82	-2.2
148,476	-		GFF5516	0.82	+0.2
148,476	-		GFF5516	0.82	-1.0
148,476	-		GFF5516	0.82	-1.3
148,476	-		GFF5516	0.82	-0.3
148,476	-		GFF5516	0.82	-1.4
148,476	-		GFF5516	0.82	-1.0
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