Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5444 and GFF5445 overlap by 4 nucleotides GFF5445 and GFF5446 are separated by 2 nucleotides GFF5446 and GFF5447 are separated by 41 nucleotides GFF5447 and GFF5448 are separated by 7 nucleotides
GFF5444 - FIG005080: Possible exported protein, at 70,792 to 75,009
GFF5444
GFF5445 - FIG003879: Uncharacterized subgroup of the nitrilase superfamily, at 75,006 to 75,821
GFF5445
GFF5446 - Two-component system sensor histidine kinase/response regulator hybrid, at 75,824 to 77,878
GFF5446
GFF5447 - Two-component transcriptional response regulator, LuxR family, at 77,920 to 78,546
GFF5447
GFF5448 - Outer membrane lipoprotein omp16 precursor, at 78,554 to 79,120
GFF5448
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 74.898 kb on - strand at 75.126 kb on + strand, within GFF5445 at 75.126 kb on + strand, within GFF5445 at 75.126 kb on + strand, within GFF5445 at 75.126 kb on + strand, within GFF5445 at 75.127 kb on - strand, within GFF5445 at 75.127 kb on - strand, within GFF5445 at 75.336 kb on + strand, within GFF5445 at 75.381 kb on + strand, within GFF5445 at 75.382 kb on - strand, within GFF5445 at 75.382 kb on - strand, within GFF5445 at 75.480 kb on + strand, within GFF5445 at 75.480 kb on + strand, within GFF5445 at 75.480 kb on + strand, within GFF5445 at 75.480 kb on + strand, within GFF5445 at 75.480 kb on + strand, within GFF5445 at 75.481 kb on - strand, within GFF5445 at 75.481 kb on - strand, within GFF5445 at 75.481 kb on - strand, within GFF5445 at 75.481 kb on - strand, within GFF5445 at 75.481 kb on - strand, within GFF5445 at 75.504 kb on + strand, within GFF5445 at 75.566 kb on + strand, within GFF5445 at 75.567 kb on - strand, within GFF5445 at 75.819 kb on + strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 76.307 kb on + strand, within GFF5446 at 76.307 kb on + strand, within GFF5446 at 76.308 kb on - strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.322 kb on + strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.323 kb on - strand, within GFF5446 at 76.391 kb on + strand, within GFF5446 at 76.406 kb on + strand, within GFF5446 at 76.406 kb on + strand, within GFF5446 at 76.406 kb on + strand, within GFF5446 at 76.406 kb on + strand, within GFF5446 at 76.407 kb on - strand, within GFF5446 at 76.407 kb on - strand, within GFF5446 at 76.407 kb on - strand, within GFF5446 at 76.814 kb on + strand, within GFF5446 at 76.814 kb on + strand, within GFF5446 at 76.814 kb on + strand, within GFF5446 at 76.814 kb on + strand, within GFF5446 at 76.814 kb on + strand, within GFF5446 at 76.814 kb on + strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.815 kb on - strand, within GFF5446 at 76.898 kb on + strand, within GFF5446 at 76.898 kb on + strand, within GFF5446 at 76.898 kb on + strand, within GFF5446 at 76.899 kb on - strand, within GFF5446 at 76.925 kb on + strand, within GFF5446 at 76.925 kb on + strand, within GFF5446 at 76.926 kb on - strand, within GFF5446 at 77.234 kb on + strand, within GFF5446 at 77.234 kb on + strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.235 kb on - strand, within GFF5446 at 77.949 kb on + strand at 77.949 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 74,898 - +0.3 75,126 + GFF5445 0.15 +0.5 75,126 + GFF5445 0.15 +0.9 75,126 + GFF5445 0.15 +0.7 75,126 + GFF5445 0.15 -0.3 75,127 - GFF5445 0.15 -0.5 75,127 - GFF5445 0.15 -1.4 75,336 + GFF5445 0.40 +1.3 75,381 + GFF5445 0.46 -2.9 75,382 - GFF5445 0.46 -0.3 75,382 - GFF5445 0.46 +0.4 75,480 + GFF5445 0.58 +0.4 75,480 + GFF5445 0.58 +0.7 75,480 + GFF5445 0.58 -0.3 75,480 + GFF5445 0.58 +1.3 75,480 + GFF5445 0.58 -1.3 75,481 - GFF5445 0.58 -0.0 75,481 - GFF5445 0.58 -0.4 75,481 - GFF5445 0.58 -1.7 75,481 - GFF5445 0.58 -1.8 75,481 - GFF5445 0.58 -1.8 75,504 + GFF5445 0.61 +1.5 75,566 + GFF5445 0.69 -1.9 75,567 - GFF5445 0.69 +0.2 75,819 + -0.7 75,820 - +3.1 75,820 - +0.3 75,820 - -0.3 75,820 - +0.4 76,307 + GFF5446 0.24 -2.7 76,307 + GFF5446 0.24 -0.9 76,308 - GFF5446 0.24 -0.9 76,322 + GFF5446 0.24 -1.0 76,322 + GFF5446 0.24 -1.2 76,322 + GFF5446 0.24 -0.3 76,322 + GFF5446 0.24 -1.4 76,322 + GFF5446 0.24 +0.3 76,322 + GFF5446 0.24 -0.5 76,322 + GFF5446 0.24 -2.0 76,322 + GFF5446 0.24 +1.1 76,322 + GFF5446 0.24 -0.0 76,323 - GFF5446 0.24 -0.5 76,323 - GFF5446 0.24 +0.2 76,323 - GFF5446 0.24 -2.1 76,323 - GFF5446 0.24 -3.6 76,323 - GFF5446 0.24 -0.5 76,323 - GFF5446 0.24 +0.0 76,323 - GFF5446 0.24 -1.6 76,323 - GFF5446 0.24 -0.5 76,323 - GFF5446 0.24 -1.7 76,323 - GFF5446 0.24 -0.5 76,323 - GFF5446 0.24 +0.2 76,323 - GFF5446 0.24 +2.8 76,323 - GFF5446 0.24 -0.3 76,323 - GFF5446 0.24 -2.0 76,391 + GFF5446 0.28 -1.6 76,406 + GFF5446 0.28 -2.5 76,406 + GFF5446 0.28 -1.0 76,406 + GFF5446 0.28 +4.2 76,406 + GFF5446 0.28 +0.2 76,407 - GFF5446 0.28 +2.7 76,407 - GFF5446 0.28 +3.0 76,407 - GFF5446 0.28 +0.5 76,814 + GFF5446 0.48 -1.1 76,814 + GFF5446 0.48 -0.9 76,814 + GFF5446 0.48 -0.1 76,814 + GFF5446 0.48 -1.6 76,814 + GFF5446 0.48 -2.4 76,814 + GFF5446 0.48 -0.1 76,815 - GFF5446 0.48 +1.1 76,815 - GFF5446 0.48 -1.7 76,815 - GFF5446 0.48 +0.0 76,815 - GFF5446 0.48 -2.0 76,815 - GFF5446 0.48 +0.2 76,815 - GFF5446 0.48 +0.3 76,815 - GFF5446 0.48 +2.0 76,898 + GFF5446 0.52 +1.7 76,898 + GFF5446 0.52 -1.3 76,898 + GFF5446 0.52 -2.0 76,899 - GFF5446 0.52 +2.3 76,925 + GFF5446 0.54 -0.4 76,925 + GFF5446 0.54 -1.2 76,926 - GFF5446 0.54 -2.1 77,234 + GFF5446 0.69 -1.7 77,234 + GFF5446 0.69 -1.6 77,235 - GFF5446 0.69 -0.7 77,235 - GFF5446 0.69 -0.9 77,235 - GFF5446 0.69 -0.0 77,235 - GFF5446 0.69 -0.9 77,235 - GFF5446 0.69 +0.3 77,235 - GFF5446 0.69 +1.2 77,235 - GFF5446 0.69 -0.9 77,949 + -1.8 77,949 + -0.7 78,544 + +1.3 78,544 + -0.4 78,544 + +0.6 78,544 + -0.2 78,544 + -2.3 78,544 + -2.5 78,545 - -0.3 78,545 - -0.5 78,545 - -1.0 78,545 - +0.1 78,545 - -1.7 78,545 - -2.4 78,545 - -2.1 78,545 - -1.4 78,545 - +1.2 78,545 - -0.5
Or see this region's nucleotide sequence