Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5440 and GFF5441 are separated by 87 nucleotides GFF5441 and GFF5442 are separated by 3 nucleotides GFF5442 and GFF5443 are separated by 16 nucleotides
GFF5440 - RNA polymerase ECF-type sigma factor, at 65,327 to 66,217
GFF5440
GFF5441 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 66,305 to 66,766
GFF5441
GFF5442 - Septum-associated rare lipoprotein A, at 66,770 to 67,954
GFF5442
GFF5443 - Glutamine synthetase adenylyl-L-tyrosine phosphorylase (EC 2.7.7.89) / Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 67,971 to 70,721
GFF5443
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 66.054 kb on - strand, within GFF5440 at 66.061 kb on + strand, within GFF5440 at 66.064 kb on + strand, within GFF5440 at 66.215 kb on + strand at 66.216 kb on - strand at 66.216 kb on - strand at 66.265 kb on + strand at 66.266 kb on - strand at 66.266 kb on - strand at 66.458 kb on + strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 67.214 kb on + strand, within GFF5442 at 67.214 kb on + strand, within GFF5442 at 67.215 kb on - strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.371 kb on + strand, within GFF5442 at 67.371 kb on + strand, within GFF5442 at 67.371 kb on + strand, within GFF5442 at 67.372 kb on - strand, within GFF5442 at 67.372 kb on - strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.633 kb on - strand, within GFF5442 at 67.633 kb on - strand, within GFF5442 at 67.677 kb on + strand, within GFF5442 at 67.677 kb on + strand, within GFF5442 at 67.732 kb on - strand, within GFF5442 at 67.732 kb on - strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.753 kb on - strand, within GFF5442 at 67.753 kb on - strand, within GFF5442 at 67.753 kb on - strand, within GFF5442 at 67.980 kb on + strand at 67.980 kb on + strand at 67.981 kb on - strand at 67.981 kb on - strand at 68.506 kb on + strand, within GFF5443 at 68.506 kb on + strand, within GFF5443 at 68.506 kb on + strand, within GFF5443 at 68.507 kb on - strand, within GFF5443 at 68.507 kb on - strand, within GFF5443 at 68.507 kb on - strand, within GFF5443 at 68.507 kb on - strand, within GFF5443 at 68.515 kb on + strand, within GFF5443 at 68.516 kb on - strand, within GFF5443 at 68.516 kb on - strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.635 kb on + strand, within GFF5443 at 68.636 kb on - strand, within GFF5443 at 68.636 kb on - strand, within GFF5443 at 68.636 kb on - strand, within GFF5443 at 68.636 kb on - strand, within GFF5443 at 68.636 kb on - strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.644 kb on + strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.645 kb on - strand, within GFF5443 at 68.677 kb on + strand, within GFF5443 at 68.678 kb on - strand, within GFF5443 at 68.708 kb on - strand, within GFF5443 at 68.737 kb on + strand, within GFF5443 at 68.738 kb on - strand, within GFF5443
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 66,054 - GFF5440 0.82 -1.7 66,061 + GFF5440 0.82 -0.0 66,064 + GFF5440 0.83 -0.7 66,215 + -0.0 66,216 - +1.1 66,216 - -2.5 66,265 + -1.1 66,266 - -1.0 66,266 - -1.9 66,458 + GFF5441 0.33 -2.0 66,459 - GFF5441 0.33 +1.7 66,459 - GFF5441 0.33 -1.8 66,459 - GFF5441 0.33 -0.5 66,459 - GFF5441 0.33 -1.8 66,551 + GFF5441 0.53 -0.5 66,551 + GFF5441 0.53 -1.9 66,551 + GFF5441 0.53 -0.1 66,551 + GFF5441 0.53 +0.3 66,551 + GFF5441 0.53 -0.2 66,552 - GFF5441 0.53 +0.0 66,552 - GFF5441 0.53 -0.7 66,552 - GFF5441 0.53 +1.5 66,552 - GFF5441 0.53 +0.9 66,552 - GFF5441 0.53 +1.1 66,552 - GFF5441 0.53 +0.3 67,214 + GFF5442 0.37 -2.0 67,214 + GFF5442 0.37 +1.5 67,215 - GFF5442 0.38 +0.4 67,224 + GFF5442 0.38 +0.0 67,224 + GFF5442 0.38 -0.1 67,224 + GFF5442 0.38 -0.8 67,224 + GFF5442 0.38 +2.0 67,224 + GFF5442 0.38 +1.1 67,224 + GFF5442 0.38 +0.0 67,224 + GFF5442 0.38 +0.4 67,224 + GFF5442 0.38 +0.4 67,224 + GFF5442 0.38 -1.3 67,224 + GFF5442 0.38 -4.0 67,225 - GFF5442 0.38 -0.9 67,225 - GFF5442 0.38 -1.6 67,225 - GFF5442 0.38 -1.3 67,225 - GFF5442 0.38 +0.1 67,225 - GFF5442 0.38 -0.5 67,225 - GFF5442 0.38 -0.9 67,225 - GFF5442 0.38 +1.0 67,371 + GFF5442 0.51 -2.4 67,371 + GFF5442 0.51 +1.0 67,371 + GFF5442 0.51 +0.5 67,372 - GFF5442 0.51 -0.5 67,372 - GFF5442 0.51 +1.4 67,485 + GFF5442 0.60 -0.1 67,485 + GFF5442 0.60 +0.4 67,485 + GFF5442 0.60 +1.7 67,485 + GFF5442 0.60 -1.6 67,485 + GFF5442 0.60 -0.6 67,485 + GFF5442 0.60 -0.5 67,485 + GFF5442 0.60 +0.4 67,485 + GFF5442 0.60 +1.2 67,485 + GFF5442 0.60 -0.9 67,485 + GFF5442 0.60 -1.3 67,485 + GFF5442 0.60 -0.1 67,486 - GFF5442 0.60 -1.4 67,486 - GFF5442 0.60 +0.5 67,486 - GFF5442 0.60 -0.8 67,486 - GFF5442 0.60 +0.6 67,486 - GFF5442 0.60 -2.4 67,486 - GFF5442 0.60 -0.9 67,486 - GFF5442 0.60 -1.3 67,581 + GFF5442 0.68 -0.9 67,581 + GFF5442 0.68 +2.9 67,581 + GFF5442 0.68 +2.3 67,581 + GFF5442 0.68 +1.6 67,581 + GFF5442 0.68 -0.9 67,581 + GFF5442 0.68 +0.3 67,581 + GFF5442 0.68 -3.3 67,581 + GFF5442 0.68 -2.5 67,581 + GFF5442 0.68 -0.2 67,581 + GFF5442 0.68 -2.7 67,581 + GFF5442 0.68 -0.0 67,581 + GFF5442 0.68 +1.5 67,581 + GFF5442 0.68 +1.6 67,581 + GFF5442 0.68 +0.6 67,581 + GFF5442 0.68 +0.7 67,582 - GFF5442 0.69 +1.5 67,582 - GFF5442 0.69 -0.0 67,582 - GFF5442 0.69 -1.3 67,582 - GFF5442 0.69 -1.4 67,582 - GFF5442 0.69 +1.1 67,582 - GFF5442 0.69 +0.5 67,582 - GFF5442 0.69 +1.3 67,582 - GFF5442 0.69 -1.6 67,582 - GFF5442 0.69 +0.2 67,582 - GFF5442 0.69 +0.3 67,582 - GFF5442 0.69 -3.0 67,582 - GFF5442 0.69 +0.2 67,623 + GFF5442 0.72 -0.3 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 -0.0 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 -1.0 67,623 + GFF5442 0.72 -0.4 67,623 + GFF5442 0.72 -2.7 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 -1.4 67,623 + GFF5442 0.72 -1.7 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 -0.5 67,623 + GFF5442 0.72 +1.5 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 -0.3 67,623 + GFF5442 0.72 -0.8 67,623 + GFF5442 0.72 +0.1 67,623 + GFF5442 0.72 +0.8 67,623 + GFF5442 0.72 +0.1 67,623 + GFF5442 0.72 -1.5 67,623 + GFF5442 0.72 -1.6 67,623 + GFF5442 0.72 +0.9 67,623 + GFF5442 0.72 +2.1 67,623 + GFF5442 0.72 -0.7 67,623 + GFF5442 0.72 -1.6 67,623 + GFF5442 0.72 -0.3 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 +0.4 67,623 + GFF5442 0.72 -2.0 67,623 + GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 +0.9 67,624 - GFF5442 0.72 +1.3 67,624 - GFF5442 0.72 +0.8 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 +1.8 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 +0.2 67,624 - GFF5442 0.72 -0.9 67,624 - GFF5442 0.72 -2.4 67,624 - GFF5442 0.72 +0.3 67,624 - GFF5442 0.72 -0.3 67,624 - GFF5442 0.72 -2.7 67,624 - GFF5442 0.72 -0.0 67,624 - GFF5442 0.72 -0.3 67,624 - GFF5442 0.72 -2.8 67,624 - GFF5442 0.72 -0.4 67,624 - GFF5442 0.72 -1.2 67,624 - GFF5442 0.72 +0.3 67,624 - GFF5442 0.72 +0.4 67,624 - GFF5442 0.72 +0.6 67,624 - GFF5442 0.72 -2.2 67,624 - GFF5442 0.72 +1.0 67,624 - GFF5442 0.72 -1.1 67,624 - GFF5442 0.72 -2.7 67,624 - GFF5442 0.72 -0.3 67,624 - GFF5442 0.72 -1.1 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 +0.2 67,624 - GFF5442 0.72 -2.5 67,624 - GFF5442 0.72 -0.5 67,624 - GFF5442 0.72 +0.2 67,624 - GFF5442 0.72 +0.5 67,624 - GFF5442 0.72 -0.8 67,624 - GFF5442 0.72 -0.2 67,624 - GFF5442 0.72 -2.6 67,624 - GFF5442 0.72 -0.0 67,624 - GFF5442 0.72 -1.5 67,624 - GFF5442 0.72 -0.1 67,632 + GFF5442 0.73 -0.0 67,632 + GFF5442 0.73 -0.6 67,632 + GFF5442 0.73 -0.7 67,632 + GFF5442 0.73 -1.0 67,632 + GFF5442 0.73 -2.9 67,632 + GFF5442 0.73 -2.0 67,633 - GFF5442 0.73 +1.3 67,633 - GFF5442 0.73 +0.6 67,677 + GFF5442 0.77 -0.1 67,677 + GFF5442 0.77 -1.3 67,732 - GFF5442 0.81 +2.3 67,732 - GFF5442 0.81 +0.7 67,752 + GFF5442 0.83 +0.7 67,752 + GFF5442 0.83 -1.2 67,752 + GFF5442 0.83 -1.0 67,752 + GFF5442 0.83 +1.0 67,752 + GFF5442 0.83 -3.4 67,753 - GFF5442 0.83 -0.5 67,753 - GFF5442 0.83 +0.9 67,753 - GFF5442 0.83 -0.8 67,980 + -0.7 67,980 + -2.7 67,981 - -1.1 67,981 - -1.0 68,506 + GFF5443 0.19 -2.1 68,506 + GFF5443 0.19 -0.9 68,506 + GFF5443 0.19 -0.3 68,507 - GFF5443 0.19 -0.8 68,507 - GFF5443 0.19 -1.6 68,507 - GFF5443 0.19 -0.9 68,507 - GFF5443 0.19 -2.0 68,515 + GFF5443 0.20 -3.3 68,516 - GFF5443 0.20 -0.9 68,516 - GFF5443 0.20 +1.6 68,635 + GFF5443 0.24 -0.6 68,635 + GFF5443 0.24 -2.0 68,635 + GFF5443 0.24 +1.2 68,635 + GFF5443 0.24 +0.7 68,635 + GFF5443 0.24 -0.0 68,635 + GFF5443 0.24 -1.5 68,635 + GFF5443 0.24 -1.5 68,636 - GFF5443 0.24 -0.7 68,636 - GFF5443 0.24 -2.2 68,636 - GFF5443 0.24 -0.7 68,636 - GFF5443 0.24 -0.7 68,636 - GFF5443 0.24 -2.7 68,644 + GFF5443 0.24 +1.3 68,644 + GFF5443 0.24 -0.7 68,644 + GFF5443 0.24 -0.9 68,644 + GFF5443 0.24 -1.2 68,644 + GFF5443 0.24 -1.9 68,644 + GFF5443 0.24 +1.5 68,644 + GFF5443 0.24 +0.3 68,644 + GFF5443 0.24 +1.3 68,644 + GFF5443 0.24 -3.1 68,644 + GFF5443 0.24 -0.6 68,644 + GFF5443 0.24 -2.0 68,644 + GFF5443 0.24 -3.2 68,644 + GFF5443 0.24 -1.2 68,644 + GFF5443 0.24 -2.4 68,645 - GFF5443 0.25 +0.7 68,645 - GFF5443 0.25 -2.1 68,645 - GFF5443 0.25 -1.6 68,645 - GFF5443 0.25 -2.0 68,645 - GFF5443 0.25 -2.6 68,645 - GFF5443 0.25 -1.8 68,645 - GFF5443 0.25 +0.4 68,677 + GFF5443 0.26 +1.2 68,678 - GFF5443 0.26 -0.3 68,708 - GFF5443 0.27 +0.3 68,737 + GFF5443 0.28 -1.4 68,738 - GFF5443 0.28 -0.0
Or see this region's nucleotide sequence