Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5401 and GFF5402 are separated by 13 nucleotides GFF5402 and GFF5403 are separated by 64 nucleotides GFF5403 and GFF5404 are separated by 18 nucleotides
GFF5401 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 25,175 to 25,945
GFF5401
GFF5402 - Transcriptional regulator, IclR family, at 25,959 to 26,813
GFF5402
GFF5403 - no description, at 26,878 to 27,594
GFF5403
GFF5404 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 27,613 to 28,536
GFF5404
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 24.973 kb on + strand at 25.008 kb on + strand at 25.008 kb on + strand at 25.008 kb on + strand at 25.008 kb on + strand at 25.008 kb on + strand at 25.008 kb on + strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.009 kb on - strand at 25.030 kb on + strand at 25.030 kb on + strand at 25.030 kb on + strand at 25.030 kb on + strand at 25.030 kb on + strand at 25.030 kb on + strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.031 kb on - strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.041 kb on - strand at 25.041 kb on - strand at 25.041 kb on - strand at 25.105 kb on + strand at 25.106 kb on - strand at 25.107 kb on + strand at 25.107 kb on + strand at 25.107 kb on + strand at 25.107 kb on + strand at 25.108 kb on - strand at 25.128 kb on + strand at 25.389 kb on + strand, within GFF5401 at 25.389 kb on + strand, within GFF5401 at 25.389 kb on + strand, within GFF5401 at 25.390 kb on - strand, within GFF5401 at 25.390 kb on - strand, within GFF5401 at 25.390 kb on - strand, within GFF5401 at 25.390 kb on - strand, within GFF5401 at 25.462 kb on + strand, within GFF5401 at 25.462 kb on + strand, within GFF5401 at 25.462 kb on + strand, within GFF5401 at 25.523 kb on + strand, within GFF5401 at 25.523 kb on + strand, within GFF5401 at 25.523 kb on + strand, within GFF5401 at 25.523 kb on + strand, within GFF5401 at 25.524 kb on - strand, within GFF5401 at 25.524 kb on - strand, within GFF5401 at 25.524 kb on - strand, within GFF5401 at 25.524 kb on - strand, within GFF5401 at 25.524 kb on - strand, within GFF5401 at 25.524 kb on - strand, within GFF5401 at 25.631 kb on + strand, within GFF5401 at 25.874 kb on + strand at 25.874 kb on + strand at 25.874 kb on + strand at 25.874 kb on + strand at 25.874 kb on + strand at 25.874 kb on + strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.875 kb on - strand at 25.918 kb on + strand at 25.918 kb on + strand at 25.918 kb on + strand at 25.918 kb on + strand at 25.919 kb on - strand at 25.919 kb on - strand at 25.919 kb on - strand at 25.919 kb on - strand at 26.047 kb on - strand, within GFF5402 at 26.047 kb on - strand, within GFF5402 at 26.047 kb on - strand, within GFF5402 at 26.112 kb on + strand, within GFF5402 at 26.112 kb on + strand, within GFF5402 at 26.113 kb on - strand, within GFF5402 at 26.113 kb on - strand, within GFF5402 at 26.223 kb on + strand, within GFF5402 at 26.223 kb on + strand, within GFF5402 at 26.223 kb on + strand, within GFF5402 at 26.223 kb on + strand, within GFF5402 at 26.224 kb on - strand, within GFF5402 at 26.224 kb on - strand, within GFF5402 at 26.224 kb on - strand, within GFF5402 at 26.224 kb on - strand, within GFF5402 at 26.224 kb on - strand, within GFF5402 at 26.224 kb on - strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.352 kb on + strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.353 kb on - strand, within GFF5402 at 26.593 kb on - strand, within GFF5402 at 26.691 kb on + strand, within GFF5402 at 26.691 kb on + strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.692 kb on - strand, within GFF5402 at 26.796 kb on + strand at 26.796 kb on + strand at 26.796 kb on + strand at 26.796 kb on + strand at 26.797 kb on - strand at 26.797 kb on - strand at 26.811 kb on + strand at 26.811 kb on + strand at 26.861 kb on + strand at 27.007 kb on + strand, within GFF5403 at 27.007 kb on + strand, within GFF5403 at 27.007 kb on + strand, within GFF5403 at 27.007 kb on + strand, within GFF5403 at 27.008 kb on - strand, within GFF5403 at 27.008 kb on - strand, within GFF5403 at 27.008 kb on - strand, within GFF5403 at 27.133 kb on + strand, within GFF5403 at 27.133 kb on + strand, within GFF5403 at 27.133 kb on + strand, within GFF5403 at 27.134 kb on - strand, within GFF5403 at 27.134 kb on - strand, within GFF5403 at 27.134 kb on - strand, within GFF5403 at 27.134 kb on - strand, within GFF5403 at 27.134 kb on - strand, within GFF5403 at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.535 kb on + strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand at 27.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 24,973 + +0.2 25,008 + -0.1 25,008 + +1.5 25,008 + -0.4 25,008 + -0.1 25,008 + -0.7 25,008 + +0.4 25,009 - +0.2 25,009 - -1.1 25,009 - -2.1 25,009 - +0.7 25,009 - +2.3 25,009 - -0.5 25,009 - +1.5 25,009 - +0.8 25,009 - +0.5 25,030 + -1.8 25,030 + -3.0 25,030 + -0.5 25,030 + -0.2 25,030 + -1.7 25,030 + +0.6 25,031 - -1.3 25,031 - -1.2 25,031 - -1.6 25,031 - +0.2 25,031 - +1.3 25,031 - +1.1 25,031 - -1.8 25,031 - +3.2 25,031 - +1.3 25,040 + +3.1 25,040 + -1.0 25,040 + +1.0 25,041 - +1.0 25,041 - +1.3 25,041 - -0.5 25,105 + +2.3 25,106 - +1.5 25,107 + +0.6 25,107 + +1.1 25,107 + -1.6 25,107 + -0.7 25,108 - +0.0 25,128 + -1.5 25,389 + GFF5401 0.28 -0.0 25,389 + GFF5401 0.28 +2.3 25,389 + GFF5401 0.28 +0.2 25,390 - GFF5401 0.28 +0.1 25,390 - GFF5401 0.28 +0.7 25,390 - GFF5401 0.28 -0.1 25,390 - GFF5401 0.28 -0.2 25,462 + GFF5401 0.37 -2.8 25,462 + GFF5401 0.37 -1.4 25,462 + GFF5401 0.37 +0.3 25,523 + GFF5401 0.45 -0.9 25,523 + GFF5401 0.45 +0.4 25,523 + GFF5401 0.45 -0.4 25,523 + GFF5401 0.45 -2.2 25,524 - GFF5401 0.45 +0.9 25,524 - GFF5401 0.45 +2.6 25,524 - GFF5401 0.45 +0.1 25,524 - GFF5401 0.45 +0.3 25,524 - GFF5401 0.45 -0.7 25,524 - GFF5401 0.45 +0.7 25,631 + GFF5401 0.59 +0.7 25,874 + +0.3 25,874 + -1.3 25,874 + +0.3 25,874 + +2.1 25,874 + +0.7 25,874 + +0.7 25,875 - -1.4 25,875 - -1.5 25,875 - -0.4 25,875 - -0.3 25,875 - +1.0 25,875 - +2.3 25,875 - -1.4 25,875 - -0.7 25,918 + -1.2 25,918 + +1.8 25,918 + -2.7 25,918 + +0.6 25,919 - -2.4 25,919 - -0.4 25,919 - -1.0 25,919 - -0.5 26,047 - GFF5402 0.10 -0.3 26,047 - GFF5402 0.10 +2.0 26,047 - GFF5402 0.10 -1.5 26,112 + GFF5402 0.18 +1.8 26,112 + GFF5402 0.18 -1.6 26,113 - GFF5402 0.18 -0.4 26,113 - GFF5402 0.18 -0.4 26,223 + GFF5402 0.31 -0.7 26,223 + GFF5402 0.31 -0.3 26,223 + GFF5402 0.31 -3.7 26,223 + GFF5402 0.31 +1.3 26,224 - GFF5402 0.31 -0.1 26,224 - GFF5402 0.31 -0.1 26,224 - GFF5402 0.31 -1.0 26,224 - GFF5402 0.31 +1.4 26,224 - GFF5402 0.31 -0.4 26,224 - GFF5402 0.31 +0.7 26,352 + GFF5402 0.46 +0.6 26,352 + GFF5402 0.46 +0.3 26,352 + GFF5402 0.46 -0.2 26,352 + GFF5402 0.46 -0.0 26,352 + GFF5402 0.46 +0.4 26,352 + GFF5402 0.46 -0.2 26,352 + GFF5402 0.46 -0.8 26,352 + GFF5402 0.46 +2.3 26,352 + GFF5402 0.46 -0.5 26,352 + GFF5402 0.46 +1.0 26,352 + GFF5402 0.46 -0.9 26,352 + GFF5402 0.46 -0.8 26,352 + GFF5402 0.46 +1.0 26,352 + GFF5402 0.46 -0.2 26,352 + GFF5402 0.46 -2.2 26,352 + GFF5402 0.46 +0.2 26,352 + GFF5402 0.46 -0.7 26,352 + GFF5402 0.46 +2.5 26,352 + GFF5402 0.46 +0.5 26,352 + GFF5402 0.46 -0.5 26,352 + GFF5402 0.46 +0.9 26,352 + GFF5402 0.46 +0.7 26,352 + GFF5402 0.46 -1.3 26,353 - GFF5402 0.46 +1.8 26,353 - GFF5402 0.46 +0.8 26,353 - GFF5402 0.46 -0.5 26,353 - GFF5402 0.46 -0.3 26,353 - GFF5402 0.46 -1.6 26,353 - GFF5402 0.46 +2.3 26,353 - GFF5402 0.46 -0.6 26,353 - GFF5402 0.46 -0.5 26,353 - GFF5402 0.46 +0.1 26,353 - GFF5402 0.46 +0.3 26,353 - GFF5402 0.46 -0.7 26,353 - GFF5402 0.46 -0.3 26,353 - GFF5402 0.46 -0.5 26,353 - GFF5402 0.46 -1.6 26,353 - GFF5402 0.46 -3.1 26,353 - GFF5402 0.46 -1.0 26,353 - GFF5402 0.46 -1.3 26,353 - GFF5402 0.46 -0.7 26,353 - GFF5402 0.46 -0.1 26,353 - GFF5402 0.46 +4.3 26,353 - GFF5402 0.46 +2.9 26,353 - GFF5402 0.46 -0.8 26,353 - GFF5402 0.46 +0.6 26,353 - GFF5402 0.46 -1.5 26,353 - GFF5402 0.46 +0.9 26,353 - GFF5402 0.46 -1.2 26,353 - GFF5402 0.46 -1.1 26,353 - GFF5402 0.46 -0.9 26,353 - GFF5402 0.46 +0.2 26,593 - GFF5402 0.74 +0.7 26,691 + GFF5402 0.86 +2.8 26,691 + GFF5402 0.86 -0.1 26,692 - GFF5402 0.86 +0.4 26,692 - GFF5402 0.86 -0.0 26,692 - GFF5402 0.86 -0.2 26,692 - GFF5402 0.86 +1.9 26,692 - GFF5402 0.86 -0.4 26,692 - GFF5402 0.86 +1.1 26,692 - GFF5402 0.86 +0.7 26,692 - GFF5402 0.86 -0.8 26,796 + -1.4 26,796 + -0.3 26,796 + +1.9 26,796 + -0.7 26,797 - -1.5 26,797 - +2.8 26,811 + -1.4 26,811 + +0.6 26,861 + +0.7 27,007 + GFF5403 0.18 -1.1 27,007 + GFF5403 0.18 +0.0 27,007 + GFF5403 0.18 +1.1 27,007 + GFF5403 0.18 +1.0 27,008 - GFF5403 0.18 -0.7 27,008 - GFF5403 0.18 +1.3 27,008 - GFF5403 0.18 -2.2 27,133 + GFF5403 0.36 +0.1 27,133 + GFF5403 0.36 -1.1 27,133 + GFF5403 0.36 +0.3 27,134 - GFF5403 0.36 +0.9 27,134 - GFF5403 0.36 +0.4 27,134 - GFF5403 0.36 +1.8 27,134 - GFF5403 0.36 +0.1 27,134 - GFF5403 0.36 -0.0 27,535 + +0.3 27,535 + +1.0 27,535 + -0.3 27,535 + -1.5 27,535 + -1.4 27,535 + -0.0 27,535 + -0.0 27,535 + +2.0 27,535 + +0.6 27,535 + -0.3 27,536 - -1.0 27,536 - +3.3 27,536 - -1.0 27,536 - -0.0 27,536 - -1.2 27,536 - -1.8 27,536 - -0.3 27,536 - +0.3 27,536 - -0.0 27,536 - +1.5 27,536 - +1.6
Or see this region's nucleotide sequence