Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5384 and GFF5385 are separated by 2 nucleotides GFF5385 and GFF5386 are separated by 13 nucleotides GFF5386 and GFF5387 are separated by 6 nucleotides
GFF5384 - Proteins containing SET domain, at 12,020 to 12,643
GFF5384
GFF5385 - Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15), at 12,646 to 13,458
GFF5385
GFF5386 - hypothetical protein, at 13,472 to 13,720
GFF5386
GFF5387 - Two-component system histidine kinase BP2548, at 13,727 to 15,169
GFF5387
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.520 kb on + strand, within GFF5386 at 13.521 kb on - strand, within GFF5386 at 13.521 kb on - strand, within GFF5386 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.894 kb on - strand, within GFF5387 at 13.894 kb on - strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.136 kb on + strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.137 kb on - strand, within GFF5387
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 13,520 + GFF5386 0.19 -1.0 13,521 - GFF5386 0.20 -0.7 13,521 - GFF5386 0.20 -1.7 13,893 + GFF5387 0.12 -1.3 13,893 + GFF5387 0.12 -1.2 13,893 + GFF5387 0.12 -2.6 13,893 + GFF5387 0.12 +0.1 13,894 - GFF5387 0.12 -0.0 13,894 - GFF5387 0.12 -2.0 14,037 + GFF5387 0.21 -2.2 14,037 + GFF5387 0.21 +1.3 14,037 + GFF5387 0.21 +0.3 14,037 + GFF5387 0.21 -0.1 14,037 + GFF5387 0.21 +0.3 14,037 + GFF5387 0.21 +0.4 14,038 - GFF5387 0.22 -1.6 14,038 - GFF5387 0.22 +0.4 14,038 - GFF5387 0.22 +0.1 14,038 - GFF5387 0.22 +0.5 14,038 - GFF5387 0.22 +1.0 14,038 - GFF5387 0.22 -0.2 14,038 - GFF5387 0.22 -1.7 14,038 - GFF5387 0.22 -0.7 14,038 - GFF5387 0.22 -2.9 14,136 + GFF5387 0.28 -2.2 14,137 - GFF5387 0.28 +1.3 14,137 - GFF5387 0.28 +0.2 14,137 - GFF5387 0.28 -1.5
Or see this region's nucleotide sequence