Strain Fitness in Variovorax sp. SCN45 around GFF5342

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5340 and GFF5341 overlap by 4 nucleotidesGFF5341 and GFF5342 are separated by 20 nucleotidesGFF5342 and GFF5343 are separated by 41 nucleotides GFF5340 - Efflux ABC transporter, ATP-binding protein, at 219,456 to 220,403 GFF5340 GFF5341 - Efflux ABC transporter, permease protein, at 220,400 to 221,164 GFF5341 GFF5342 - YrbA protein, at 221,185 to 221,427 GFF5342 GFF5343 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 221,469 to 222,761 GFF5343 Position (kb) 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.433 kb on + strandat 220.433 kb on + strandat 220.433 kb on + strandat 220.433 kb on + strandat 220.433 kb on + strandat 220.433 kb on + strandat 220.433 kb on + strandat 220.433 kb on + strandat 220.434 kb on - strandat 220.505 kb on + strand, within GFF5341at 220.505 kb on + strand, within GFF5341at 220.505 kb on + strand, within GFF5341at 220.505 kb on + strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.506 kb on - strand, within GFF5341at 220.550 kb on + strand, within GFF5341at 220.550 kb on + strand, within GFF5341at 220.551 kb on - strand, within GFF5341at 220.565 kb on + strand, within GFF5341at 220.718 kb on + strand, within GFF5341at 220.718 kb on + strand, within GFF5341at 220.718 kb on + strand, within GFF5341at 220.719 kb on - strand, within GFF5341at 220.719 kb on - strand, within GFF5341at 220.719 kb on - strand, within GFF5341at 220.719 kb on - strand, within GFF5341at 220.719 kb on - strand, within GFF5341at 220.719 kb on - strand, within GFF5341at 220.958 kb on + strand, within GFF5341at 220.958 kb on + strand, within GFF5341at 220.958 kb on + strand, within GFF5341at 220.958 kb on + strand, within GFF5341at 220.959 kb on - strand, within GFF5341at 220.959 kb on - strand, within GFF5341at 220.959 kb on - strand, within GFF5341at 220.959 kb on - strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.018 kb on + strand, within GFF5341at 221.019 kb on - strand, within GFF5341at 221.019 kb on - strand, within GFF5341at 221.019 kb on - strand, within GFF5341at 221.019 kb on - strand, within GFF5341at 221.019 kb on - strand, within GFF5341at 221.040 kb on - strand, within GFF5341at 221.040 kb on - strand, within GFF5341at 221.269 kb on + strand, within GFF5342at 221.269 kb on + strand, within GFF5342at 221.269 kb on + strand, within GFF5342at 221.270 kb on - strand, within GFF5342at 221.332 kb on + strand, within GFF5342at 221.332 kb on + strand, within GFF5342at 221.332 kb on + strand, within GFF5342at 221.333 kb on - strand, within GFF5342at 221.333 kb on - strand, within GFF5342at 221.333 kb on - strand, within GFF5342at 221.333 kb on - strand, within GFF5342at 221.358 kb on + strand, within GFF5342at 221.359 kb on - strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.392 kb on + strand, within GFF5342at 221.393 kb on - strand, within GFF5342at 221.393 kb on - strand, within GFF5342at 221.426 kb on - strandat 221.516 kb on - strandat 221.516 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
220,433 + -1.8
220,433 + -0.3
220,433 + +0.4
220,433 + -1.0
220,433 + +1.3
220,433 + -1.3
220,433 + -1.2
220,433 + +0.7
220,434 - -0.4
220,505 + GFF5341 0.14 +0.1
220,505 + GFF5341 0.14 +0.2
220,505 + GFF5341 0.14 -1.2
220,505 + GFF5341 0.14 -1.9
220,506 - GFF5341 0.14 +1.0
220,506 - GFF5341 0.14 -1.6
220,506 - GFF5341 0.14 -1.4
220,506 - GFF5341 0.14 -1.8
220,506 - GFF5341 0.14 +1.4
220,506 - GFF5341 0.14 +0.7
220,506 - GFF5341 0.14 -1.0
220,506 - GFF5341 0.14 -0.5
220,550 + GFF5341 0.20 +0.8
220,550 + GFF5341 0.20 -0.9
220,551 - GFF5341 0.20 +0.1
220,565 + GFF5341 0.22 +0.2
220,718 + GFF5341 0.42 -0.4
220,718 + GFF5341 0.42 -0.5
220,718 + GFF5341 0.42 -0.3
220,719 - GFF5341 0.42 -0.8
220,719 - GFF5341 0.42 -1.3
220,719 - GFF5341 0.42 -3.5
220,719 - GFF5341 0.42 +1.0
220,719 - GFF5341 0.42 +0.3
220,719 - GFF5341 0.42 +0.7
220,958 + GFF5341 0.73 -0.5
220,958 + GFF5341 0.73 +0.0
220,958 + GFF5341 0.73 -1.4
220,958 + GFF5341 0.73 +0.2
220,959 - GFF5341 0.73 -0.3
220,959 - GFF5341 0.73 +2.0
220,959 - GFF5341 0.73 +0.3
220,959 - GFF5341 0.73 -0.5
221,018 + GFF5341 0.81 -0.1
221,018 + GFF5341 0.81 +0.4
221,018 + GFF5341 0.81 -1.6
221,018 + GFF5341 0.81 -2.0
221,018 + GFF5341 0.81 -0.3
221,018 + GFF5341 0.81 -0.7
221,018 + GFF5341 0.81 -0.2
221,018 + GFF5341 0.81 +0.8
221,018 + GFF5341 0.81 -1.4
221,018 + GFF5341 0.81 -1.2
221,018 + GFF5341 0.81 -1.2
221,019 - GFF5341 0.81 +0.5
221,019 - GFF5341 0.81 -1.6
221,019 - GFF5341 0.81 -0.8
221,019 - GFF5341 0.81 -1.6
221,019 - GFF5341 0.81 -0.2
221,040 - GFF5341 0.84 -2.1
221,040 - GFF5341 0.84 -0.3
221,269 + GFF5342 0.35 +1.2
221,269 + GFF5342 0.35 -0.0
221,269 + GFF5342 0.35 -0.5
221,270 - GFF5342 0.35 +2.0
221,332 + GFF5342 0.60 -1.7
221,332 + GFF5342 0.60 -1.7
221,332 + GFF5342 0.60 +1.7
221,333 - GFF5342 0.61 -0.8
221,333 - GFF5342 0.61 -2.0
221,333 - GFF5342 0.61 -0.8
221,333 - GFF5342 0.61 +1.8
221,358 + GFF5342 0.71 -1.9
221,359 - GFF5342 0.72 +2.0
221,392 + GFF5342 0.85 -0.8
221,392 + GFF5342 0.85 +0.3
221,392 + GFF5342 0.85 -1.5
221,392 + GFF5342 0.85 -1.2
221,392 + GFF5342 0.85 +0.4
221,392 + GFF5342 0.85 -0.4
221,392 + GFF5342 0.85 -2.8
221,392 + GFF5342 0.85 +0.2
221,392 + GFF5342 0.85 +0.1
221,392 + GFF5342 0.85 -0.3
221,392 + GFF5342 0.85 -0.1
221,392 + GFF5342 0.85 -2.0
221,392 + GFF5342 0.85 +0.1
221,392 + GFF5342 0.85 +0.2
221,392 + GFF5342 0.85 -1.9
221,392 + GFF5342 0.85 -0.6
221,393 - GFF5342 0.86 -1.5
221,393 - GFF5342 0.86 +0.5
221,426 - -0.0
221,516 - -1.5
221,516 - -0.0

Or see this region's nucleotide sequence