Strain Fitness in Variovorax sp. SCN45 around GFF513

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF510 and GFF511 overlap by 4 nucleotidesGFF511 and GFF512 overlap by 4 nucleotidesGFF512 and GFF513 are separated by 44 nucleotidesGFF513 and GFF514 are separated by 54 nucleotidesGFF514 and GFF515 are separated by 15 nucleotides GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371 GFF510 GFF511 - no description, at 552,368 to 552,514 GFF511 GFF512 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 552,511 to 553,278 GFF512 GFF513 - Chitinase (EC 3.2.1.14), at 553,323 to 554,780 GFF513 GFF514 - no description, at 554,835 to 554,957 GFF514 GFF515 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 554,973 to 556,160 GFF515 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 552.375 kb on + strandat 552.375 kb on + strandat 552.376 kb on - strandat 552.542 kb on + strandat 552.542 kb on + strandat 552.542 kb on + strandat 552.543 kb on - strandat 552.543 kb on - strandat 553.151 kb on + strand, within GFF512at 553.151 kb on + strand, within GFF512at 553.151 kb on + strand, within GFF512at 553.151 kb on + strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.152 kb on - strand, within GFF512at 553.342 kb on + strandat 553.342 kb on + strandat 553.342 kb on + strandat 553.342 kb on + strandat 553.343 kb on - strandat 553.343 kb on - strandat 553.343 kb on - strandat 553.345 kb on + strandat 553.345 kb on + strandat 553.345 kb on + strandat 553.345 kb on + strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.346 kb on - strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.417 kb on + strandat 553.417 kb on + strandat 553.418 kb on - strandat 553.423 kb on + strandat 553.423 kb on + strandat 553.423 kb on + strandat 553.423 kb on + strandat 553.424 kb on - strandat 553.424 kb on - strandat 553.424 kb on - strandat 553.424 kb on - strandat 553.435 kb on + strandat 553.435 kb on + strandat 553.435 kb on + strandat 553.436 kb on - strandat 553.445 kb on - strandat 553.445 kb on - strandat 553.445 kb on - strandat 553.463 kb on + strandat 553.463 kb on + strandat 553.463 kb on + strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.464 kb on - strandat 553.471 kb on + strand, within GFF513at 553.471 kb on + strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.472 kb on - strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.486 kb on + strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.487 kb on - strand, within GFF513at 553.594 kb on + strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.595 kb on - strand, within GFF513at 553.627 kb on + strand, within GFF513at 553.628 kb on - strand, within GFF513at 553.685 kb on - strand, within GFF513at 553.685 kb on - strand, within GFF513at 553.855 kb on + strand, within GFF513at 553.856 kb on - strand, within GFF513at 553.856 kb on - strand, within GFF513at 553.922 kb on - strand, within GFF513at 553.922 kb on - strand, within GFF513at 553.960 kb on + strand, within GFF513at 553.961 kb on - strand, within GFF513at 553.978 kb on + strand, within GFF513at 553.978 kb on + strand, within GFF513at 553.979 kb on - strand, within GFF513at 553.979 kb on - strand, within GFF513at 553.999 kb on + strand, within GFF513at 553.999 kb on + strand, within GFF513at 554.000 kb on - strand, within GFF513at 554.000 kb on - strand, within GFF513at 554.068 kb on + strand, within GFF513at 554.068 kb on + strand, within GFF513at 554.069 kb on - strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.227 kb on + strand, within GFF513at 554.227 kb on + strand, within GFF513at 554.228 kb on - strand, within GFF513at 554.228 kb on - strand, within GFF513at 554.305 kb on + strand, within GFF513at 554.305 kb on + strand, within GFF513at 554.331 kb on - strand, within GFF513at 554.338 kb on + strand, within GFF513at 554.339 kb on - strand, within GFF513at 554.339 kb on - strand, within GFF513at 554.339 kb on - strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 555.079 kb on + strandat 555.079 kb on + strandat 555.079 kb on + strandat 555.079 kb on + strandat 555.079 kb on + strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.280 kb on + strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.331 kb on + strand, within GFF515at 555.331 kb on + strand, within GFF515at 555.332 kb on - strand, within GFF515at 555.332 kb on - strand, within GFF515at 555.332 kb on - strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.422 kb on - strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.569 kb on - strand, within GFF515at 555.569 kb on - strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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552,375 + -2.1
552,375 + +1.9
552,376 - -0.7
552,542 + -0.9
552,542 + -1.4
552,542 + -1.3
552,543 - +1.1
552,543 - +0.5
553,151 + GFF512 0.83 -1.1
553,151 + GFF512 0.83 -2.1
553,151 + GFF512 0.83 +0.4
553,151 + GFF512 0.83 -1.4
553,152 - GFF512 0.83 -0.2
553,152 - GFF512 0.83 -1.0
553,152 - GFF512 0.83 -1.7
553,152 - GFF512 0.83 +0.7
553,152 - GFF512 0.83 -2.7
553,152 - GFF512 0.83 +0.4
553,342 + +0.6
553,342 + -0.8
553,342 + -1.6
553,342 + +0.1
553,343 - -0.3
553,343 - -0.2
553,343 - +0.4
553,345 + -1.0
553,345 + +0.1
553,345 + -1.4
553,345 + +1.3
553,346 - +1.6
553,346 - -0.2
553,346 - +0.5
553,346 - -1.8
553,346 - -0.2
553,346 - -1.9
553,346 - +0.0
553,346 - -0.0
553,381 + -0.5
553,381 + +0.2
553,381 + -0.7
553,381 + -0.4
553,417 + -1.4
553,417 + +0.2
553,418 - +0.7
553,423 + +3.0
553,423 + +0.1
553,423 + -0.3
553,423 + -0.6
553,424 - -1.2
553,424 - -0.1
553,424 - +0.9
553,424 - +0.6
553,435 + +0.6
553,435 + +0.6
553,435 + +1.6
553,436 - -0.4
553,445 - +1.4
553,445 - -2.4
553,445 - +1.6
553,463 + -0.2
553,463 + -1.4
553,463 + +1.0
553,464 - -0.9
553,464 - -2.8
553,464 - +1.4
553,464 - -2.8
553,464 - -2.1
553,471 + GFF513 0.10 -2.9
553,471 + GFF513 0.10 -0.7
553,472 - GFF513 0.10 -1.0
553,472 - GFF513 0.10 -3.7
553,472 - GFF513 0.10 -1.7
553,472 - GFF513 0.10 +1.6
553,472 - GFF513 0.10 +0.2
553,472 - GFF513 0.10 +0.5
553,486 + GFF513 0.11 +0.0
553,486 + GFF513 0.11 -1.6
553,486 + GFF513 0.11 -0.8
553,486 + GFF513 0.11 +0.4
553,486 + GFF513 0.11 -1.2
553,486 + GFF513 0.11 +0.0
553,486 + GFF513 0.11 -0.8
553,486 + GFF513 0.11 +2.4
553,486 + GFF513 0.11 +1.6
553,487 - GFF513 0.11 -0.2
553,487 - GFF513 0.11 -1.6
553,487 - GFF513 0.11 +0.2
553,487 - GFF513 0.11 -0.7
553,487 - GFF513 0.11 -2.4
553,487 - GFF513 0.11 +0.5
553,487 - GFF513 0.11 -0.1
553,487 - GFF513 0.11 -0.9
553,594 + GFF513 0.19 -1.7
553,595 - GFF513 0.19 -0.7
553,595 - GFF513 0.19 +1.3
553,595 - GFF513 0.19 +0.3
553,595 - GFF513 0.19 -1.9
553,595 - GFF513 0.19 -0.4
553,595 - GFF513 0.19 +1.1
553,627 + GFF513 0.21 -3.3
553,628 - GFF513 0.21 +0.6
553,685 - GFF513 0.25 +1.1
553,685 - GFF513 0.25 -2.4
553,855 + GFF513 0.36 -0.3
553,856 - GFF513 0.37 -0.7
553,856 - GFF513 0.37 -2.7
553,922 - GFF513 0.41 -0.4
553,922 - GFF513 0.41 -1.7
553,960 + GFF513 0.44 +0.6
553,961 - GFF513 0.44 -2.0
553,978 + GFF513 0.45 -1.1
553,978 + GFF513 0.45 -0.1
553,979 - GFF513 0.45 -1.0
553,979 - GFF513 0.45 -1.9
553,999 + GFF513 0.46 +0.1
553,999 + GFF513 0.46 -0.4
554,000 - GFF513 0.46 +0.0
554,000 - GFF513 0.46 -0.6
554,068 + GFF513 0.51 -1.7
554,068 + GFF513 0.51 +1.3
554,069 - GFF513 0.51 +1.2
554,176 + GFF513 0.59 -0.5
554,176 + GFF513 0.59 -1.9
554,176 + GFF513 0.59 -1.0
554,177 - GFF513 0.59 +3.6
554,177 - GFF513 0.59 -2.3
554,177 - GFF513 0.59 -0.7
554,177 - GFF513 0.59 -1.0
554,227 + GFF513 0.62 +0.1
554,227 + GFF513 0.62 -0.2
554,228 - GFF513 0.62 -0.7
554,228 - GFF513 0.62 -1.6
554,305 + GFF513 0.67 -1.6
554,305 + GFF513 0.67 -0.7
554,331 - GFF513 0.69 -0.0
554,338 + GFF513 0.70 +1.9
554,339 - GFF513 0.70 -1.0
554,339 - GFF513 0.70 -0.3
554,339 - GFF513 0.70 +0.4
554,341 + GFF513 0.70 +1.2
554,341 + GFF513 0.70 +0.9
554,341 + GFF513 0.70 +1.9
554,341 + GFF513 0.70 -2.5
554,341 + GFF513 0.70 +1.8
554,342 - GFF513 0.70 +0.6
554,342 - GFF513 0.70 +0.4
554,342 - GFF513 0.70 -0.9
554,342 - GFF513 0.70 -2.6
554,342 - GFF513 0.70 +0.6
554,342 - GFF513 0.70 -0.9
554,342 - GFF513 0.70 +0.7
554,404 + GFF513 0.74 +1.6
554,404 + GFF513 0.74 +0.5
554,404 + GFF513 0.74 +0.4
554,404 + GFF513 0.74 -1.6
554,404 + GFF513 0.74 -1.0
554,404 + GFF513 0.74 -1.2
554,404 + GFF513 0.74 +0.3
554,404 + GFF513 0.74 -0.2
554,404 + GFF513 0.74 -0.7
554,405 - GFF513 0.74 -1.4
554,405 - GFF513 0.74 -0.7
554,405 - GFF513 0.74 +0.4
554,405 - GFF513 0.74 -1.0
554,405 - GFF513 0.74 -1.2
554,405 - GFF513 0.74 +1.0
554,405 - GFF513 0.74 +2.2
554,405 - GFF513 0.74 -0.9
554,405 - GFF513 0.74 -1.2
554,405 - GFF513 0.74 -1.4
554,405 - GFF513 0.74 -1.0
554,405 - GFF513 0.74 -0.3
554,405 - GFF513 0.74 -1.4
554,405 - GFF513 0.74 +1.9
554,405 - GFF513 0.74 -0.1
554,405 - GFF513 0.74 +0.0
554,405 - GFF513 0.74 +0.9
554,405 - GFF513 0.74 +0.4
554,405 - GFF513 0.74 -0.4
554,555 - GFF513 0.84 -0.1
554,555 - GFF513 0.84 +0.5
554,555 - GFF513 0.84 -1.0
554,555 - GFF513 0.84 +0.0
554,555 - GFF513 0.84 +0.6
555,079 + +0.6
555,079 + -2.2
555,079 + -1.6
555,079 + +0.6
555,079 + -2.9
555,080 - -0.6
555,080 - +1.1
555,080 - -1.0
555,080 - -0.7
555,080 - +1.3
555,280 + GFF515 0.26 -1.2
555,281 - GFF515 0.26 -0.4
555,281 - GFF515 0.26 -1.9
555,281 - GFF515 0.26 +1.3
555,281 - GFF515 0.26 -2.1
555,281 - GFF515 0.26 +0.1
555,331 + GFF515 0.30 -2.5
555,331 + GFF515 0.30 -0.7
555,332 - GFF515 0.30 -1.6
555,332 - GFF515 0.30 -1.1
555,332 - GFF515 0.30 +0.8
555,334 + GFF515 0.30 +0.6
555,334 + GFF515 0.30 -0.4
555,334 + GFF515 0.30 -1.7
555,334 + GFF515 0.30 -0.0
555,334 + GFF515 0.30 +0.6
555,335 - GFF515 0.30 -1.2
555,335 - GFF515 0.30 +0.2
555,335 - GFF515 0.30 -2.4
555,335 - GFF515 0.30 +0.3
555,337 + GFF515 0.31 -0.7
555,337 + GFF515 0.31 -0.6
555,337 + GFF515 0.31 -0.0
555,337 + GFF515 0.31 +1.9
555,337 + GFF515 0.31 -0.5
555,337 + GFF515 0.31 -2.5
555,338 - GFF515 0.31 -0.4
555,338 - GFF515 0.31 -1.5
555,338 - GFF515 0.31 -0.4
555,338 - GFF515 0.31 +0.6
555,338 - GFF515 0.31 -0.4
555,338 - GFF515 0.31 -0.4
555,371 - GFF515 0.34 -1.5
555,371 - GFF515 0.34 +0.6
555,371 - GFF515 0.34 -1.4
555,371 - GFF515 0.34 +0.5
555,422 - GFF515 0.38 -0.4
555,568 + GFF515 0.50 +0.1
555,568 + GFF515 0.50 -0.2
555,568 + GFF515 0.50 -1.6
555,568 + GFF515 0.50 -0.3
555,568 + GFF515 0.50 -2.2
555,569 - GFF515 0.50 -0.0
555,569 - GFF515 0.50 +0.8
555,739 + GFF515 0.64 -0.4
555,739 + GFF515 0.64 +0.2
555,739 + GFF515 0.64 -2.0
555,739 + GFF515 0.64 -0.6
555,739 + GFF515 0.64 -1.2
555,739 + GFF515 0.64 -0.6
555,739 + GFF515 0.64 +2.6
555,739 + GFF515 0.64 +1.4
555,739 + GFF515 0.64 -0.2
555,739 + GFF515 0.64 -0.9
555,739 + GFF515 0.64 -1.7
555,739 + GFF515 0.64 +0.0
555,739 + GFF515 0.64 -1.7
555,740 - GFF515 0.65 -0.1
555,740 - GFF515 0.65 -0.7
555,740 - GFF515 0.65 -1.7
555,740 - GFF515 0.65 -1.2
555,740 - GFF515 0.65 -0.9
555,740 - GFF515 0.65 -0.7
555,740 - GFF515 0.65 -0.5
555,740 - GFF515 0.65 -0.4
555,740 - GFF515 0.65 +0.1
555,740 - GFF515 0.65 -2.9
555,740 - GFF515 0.65 +1.2
555,740 - GFF515 0.65 +0.4
555,740 - GFF515 0.65 -2.7
555,740 - GFF515 0.65 +0.3
555,740 - GFF515 0.65 -1.4
555,740 - GFF515 0.65 -1.9
555,740 - GFF515 0.65 -0.4

Or see this region's nucleotide sequence