Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5069 and GFF5070 are separated by 31 nucleotides GFF5070 and GFF5071 are separated by 77 nucleotides GFF5071 and GFF5072 are separated by 95 nucleotides
GFF5069 - BUG/TctC family periplasmic protein, at 171,212 to 172,180
GFF5069
GFF5070 - Zn-dependent protease with chaperone function, at 172,212 to 173,087
GFF5070
GFF5071 - AmpG permease, at 173,165 to 174,532
GFF5071
GFF5072 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 174,628 to 175,854
GFF5072
Position (kb) 173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 172.381 kb on + strand, within GFF5070 at 172.381 kb on + strand, within GFF5070 at 172.381 kb on + strand, within GFF5070 at 172.381 kb on + strand, within GFF5070 at 172.382 kb on - strand, within GFF5070 at 172.382 kb on - strand, within GFF5070 at 172.871 kb on - strand, within GFF5070 at 172.871 kb on - strand, within GFF5070 at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.079 kb on + strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.080 kb on - strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.087 kb on + strand at 173.088 kb on - strand at 173.088 kb on - strand at 173.088 kb on - strand at 173.088 kb on - strand at 173.088 kb on - strand at 173.088 kb on - strand at 173.088 kb on - strand at 173.101 kb on + strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.102 kb on - strand at 173.232 kb on - strand at 173.358 kb on - strand, within GFF5071 at 173.358 kb on - strand, within GFF5071 at 173.381 kb on + strand, within GFF5071 at 173.381 kb on + strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.382 kb on - strand, within GFF5071 at 173.661 kb on - strand, within GFF5071 at 173.768 kb on + strand, within GFF5071 at 173.769 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.945 kb on + strand, within GFF5071 at 173.945 kb on + strand, within GFF5071 at 173.945 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.033 kb on - strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.084 kb on - strand, within GFF5071 at 174.084 kb on - strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.201 kb on - strand, within GFF5071 at 174.201 kb on - strand, within GFF5071 at 174.201 kb on - strand, within GFF5071 at 174.302 kb on + strand, within GFF5071 at 174.303 kb on - strand, within GFF5071 at 174.303 kb on - strand, within GFF5071 at 174.329 kb on + strand, within GFF5071 at 174.329 kb on + strand, within GFF5071 at 174.329 kb on + strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.344 kb on + strand, within GFF5071 at 174.345 kb on - strand, within GFF5071 at 174.345 kb on - strand, within GFF5071 at 174.420 kb on - strand at 174.425 kb on + strand at 174.426 kb on - strand at 174.426 kb on - strand at 174.531 kb on - strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.583 kb on + strand at 174.583 kb on + strand at 174.599 kb on + strand at 174.599 kb on + strand at 174.599 kb on + strand at 174.599 kb on + strand at 174.600 kb on - strand at 174.600 kb on - strand at 174.600 kb on - strand at 174.600 kb on - strand at 174.674 kb on + strand at 174.674 kb on + strand at 174.675 kb on - strand at 174.675 kb on - strand at 174.940 kb on + strand, within GFF5072 at 174.940 kb on + strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 175.009 kb on + strand, within GFF5072 at 175.009 kb on + strand, within GFF5072 at 175.010 kb on - strand, within GFF5072 at 175.010 kb on - strand, within GFF5072 at 175.405 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 172,381 + GFF5070 0.19 +0.2 172,381 + GFF5070 0.19 -0.6 172,381 + GFF5070 0.19 -0.2 172,381 + GFF5070 0.19 +2.3 172,382 - GFF5070 0.19 +1.0 172,382 - GFF5070 0.19 -1.5 172,871 - GFF5070 0.75 -1.1 172,871 - GFF5070 0.75 -0.8 173,079 + -0.5 173,079 + -0.4 173,079 + -0.7 173,079 + +0.3 173,079 + +0.2 173,079 + -2.0 173,079 + +2.9 173,079 + +0.7 173,079 + -0.1 173,079 + +1.2 173,080 - -1.1 173,080 - +0.7 173,080 - -1.6 173,080 - +0.3 173,080 - +3.8 173,080 - +0.5 173,080 - +1.3 173,080 - -0.6 173,087 + -1.4 173,087 + +0.3 173,087 + -0.4 173,087 + -0.3 173,087 + -1.5 173,087 + +0.3 173,087 + -0.6 173,087 + -2.6 173,087 + +0.3 173,088 - +1.1 173,088 - +1.0 173,088 - +1.2 173,088 - +2.1 173,088 - +0.7 173,088 - -0.9 173,088 - -2.9 173,101 + +1.0 173,102 - +3.7 173,102 - -1.4 173,102 - -0.3 173,102 - +0.5 173,102 - -2.2 173,102 - +0.3 173,102 - +0.9 173,102 - +0.7 173,232 - -0.9 173,358 - GFF5071 0.14 -0.3 173,358 - GFF5071 0.14 -2.1 173,381 + GFF5071 0.16 +0.3 173,381 + GFF5071 0.16 +1.3 173,382 - GFF5071 0.16 -1.3 173,382 - GFF5071 0.16 -2.8 173,382 - GFF5071 0.16 -1.8 173,382 - GFF5071 0.16 -0.1 173,382 - GFF5071 0.16 -0.1 173,382 - GFF5071 0.16 -0.5 173,382 - GFF5071 0.16 -2.3 173,661 - GFF5071 0.36 -2.6 173,768 + GFF5071 0.44 -3.1 173,769 - GFF5071 0.44 -2.3 173,796 - GFF5071 0.46 -2.5 173,796 - GFF5071 0.46 +0.7 173,796 - GFF5071 0.46 -1.1 173,796 - GFF5071 0.46 +0.2 173,796 - GFF5071 0.46 -1.3 173,945 + GFF5071 0.57 -0.4 173,945 + GFF5071 0.57 -3.0 173,945 + GFF5071 0.57 -1.6 173,987 + GFF5071 0.60 -3.1 173,987 + GFF5071 0.60 +0.3 173,987 + GFF5071 0.60 -1.5 173,987 + GFF5071 0.60 +0.9 173,987 + GFF5071 0.60 -3.7 173,988 - GFF5071 0.60 -4.3 173,988 - GFF5071 0.60 +2.3 173,988 - GFF5071 0.60 +2.3 173,988 - GFF5071 0.60 +0.7 174,032 + GFF5071 0.63 -1.2 174,032 + GFF5071 0.63 -3.4 174,032 + GFF5071 0.63 -2.0 174,032 + GFF5071 0.63 -1.2 174,033 - GFF5071 0.63 -2.1 174,083 + GFF5071 0.67 -1.5 174,083 + GFF5071 0.67 +0.3 174,083 + GFF5071 0.67 -3.9 174,083 + GFF5071 0.67 +0.7 174,083 + GFF5071 0.67 -2.6 174,084 - GFF5071 0.67 +0.8 174,084 - GFF5071 0.67 -2.3 174,200 + GFF5071 0.76 -1.1 174,200 + GFF5071 0.76 +1.3 174,200 + GFF5071 0.76 -3.9 174,200 + GFF5071 0.76 -2.5 174,200 + GFF5071 0.76 -2.5 174,200 + GFF5071 0.76 -3.5 174,200 + GFF5071 0.76 -2.5 174,200 + GFF5071 0.76 -0.5 174,201 - GFF5071 0.76 -0.9 174,201 - GFF5071 0.76 -1.1 174,201 - GFF5071 0.76 +2.3 174,302 + GFF5071 0.83 -1.5 174,303 - GFF5071 0.83 -0.8 174,303 - GFF5071 0.83 -0.7 174,329 + GFF5071 0.85 -0.1 174,329 + GFF5071 0.85 -1.0 174,329 + GFF5071 0.85 -2.5 174,330 - GFF5071 0.85 -1.8 174,330 - GFF5071 0.85 -3.3 174,330 - GFF5071 0.85 -1.4 174,330 - GFF5071 0.85 -2.5 174,330 - GFF5071 0.85 -2.0 174,330 - GFF5071 0.85 +0.3 174,330 - GFF5071 0.85 -4.0 174,330 - GFF5071 0.85 -2.8 174,344 + GFF5071 0.86 -2.0 174,345 - GFF5071 0.86 -2.1 174,345 - GFF5071 0.86 -2.0 174,420 - +1.3 174,425 + -0.3 174,426 - -0.3 174,426 - -0.1 174,531 - +0.3 174,546 + -0.3 174,546 + +0.3 174,546 + -0.0 174,546 + -0.8 174,546 + -2.5 174,546 + -0.2 174,546 + +0.5 174,546 + -0.7 174,547 - +0.1 174,547 - -2.9 174,547 - -1.5 174,547 - -1.4 174,547 - +0.7 174,583 + -0.8 174,583 + +0.0 174,599 + -0.0 174,599 + +0.4 174,599 + -1.1 174,599 + +1.8 174,600 - -0.7 174,600 - -1.2 174,600 - -0.4 174,600 - -0.6 174,674 + -1.1 174,674 + -0.3 174,675 - +1.0 174,675 - +1.3 174,940 + GFF5072 0.25 -0.5 174,940 + GFF5072 0.25 -1.2 174,941 - GFF5072 0.26 +0.4 174,941 - GFF5072 0.26 -2.4 174,941 - GFF5072 0.26 -0.7 174,941 - GFF5072 0.26 +1.3 175,009 + GFF5072 0.31 +1.3 175,009 + GFF5072 0.31 -0.1 175,010 - GFF5072 0.31 -1.2 175,010 - GFF5072 0.31 +0.9 175,405 + GFF5072 0.63 +0.1 175,522 + GFF5072 0.73 -1.3 175,522 + GFF5072 0.73 +0.1 175,522 + GFF5072 0.73 +0.5 175,522 + GFF5072 0.73 -1.1 175,523 - GFF5072 0.73 -1.2 175,523 - GFF5072 0.73 +0.1 175,523 - GFF5072 0.73 -1.2 175,523 - GFF5072 0.73 -0.8 175,523 - GFF5072 0.73 -0.9 175,523 - GFF5072 0.73 +0.1 175,523 - GFF5072 0.73 +0.9 175,523 - GFF5072 0.73 +0.6 175,523 - GFF5072 0.73 +2.4
Or see this region's nucleotide sequence