Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5048 and GFF5049 are separated by 90 nucleotides GFF5049 and GFF5050 overlap by 4 nucleotides
GFF5048 - no description, at 148,929 to 149,945
GFF5048
GFF5049 - NAD-dependent protein deacetylase of SIR2 family, at 150,036 to 150,785
GFF5049
GFF5050 - Transcriptional regulator, IclR family, at 150,782 to 151,642
GFF5050
Position (kb) 150
151 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.041 kb on + strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.042 kb on - strand, within GFF5048 at 149.057 kb on - strand, within GFF5048 at 149.112 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.152 kb on + strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.153 kb on - strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.156 kb on + strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.157 kb on - strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.393 kb on + strand, within GFF5048 at 149.394 kb on - strand, within GFF5048 at 149.394 kb on - strand, within GFF5048 at 149.454 kb on + strand, within GFF5048 at 149.455 kb on - strand, within GFF5048 at 149.455 kb on - strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.534 kb on + strand, within GFF5048 at 149.535 kb on - strand, within GFF5048 at 149.535 kb on - strand, within GFF5048 at 149.535 kb on - strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.655 kb on + strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.656 kb on - strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.700 kb on + strand, within GFF5048 at 149.701 kb on + strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.701 kb on - strand, within GFF5048 at 149.851 kb on + strand at 149.852 kb on - strand at 149.852 kb on - strand at 149.891 kb on + strand at 149.891 kb on + strand at 149.892 kb on - strand at 149.892 kb on - strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.893 kb on + strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.894 kb on - strand at 149.917 kb on - strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.948 kb on - strand at 149.959 kb on + strand at 149.959 kb on + strand at 149.959 kb on + strand at 149.960 kb on - strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.653 kb on - strand, within GFF5049 at 150.653 kb on - strand, within GFF5049 at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.741 kb on + strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 150.742 kb on - strand at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.182 kb on + strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.183 kb on - strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.324 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.434 kb on + strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.435 kb on - strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.491 kb on + strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.492 kb on - strand, within GFF5050 at 151.685 kb on + strand at 151.685 kb on + strand at 151.685 kb on + strand at 151.685 kb on + strand at 151.686 kb on - strand at 151.686 kb on - strand at 151.692 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 149,041 + GFF5048 0.11 -2.0 149,041 + GFF5048 0.11 +0.2 149,041 + GFF5048 0.11 -0.1 149,041 + GFF5048 0.11 -1.8 149,041 + GFF5048 0.11 -0.1 149,041 + GFF5048 0.11 -1.4 149,041 + GFF5048 0.11 -3.8 149,041 + GFF5048 0.11 -1.2 149,042 - GFF5048 0.11 +0.3 149,042 - GFF5048 0.11 +0.2 149,042 - GFF5048 0.11 -0.5 149,042 - GFF5048 0.11 -0.8 149,042 - GFF5048 0.11 +2.5 149,042 - GFF5048 0.11 +0.1 149,057 - GFF5048 0.13 -1.2 149,112 + GFF5048 0.18 +0.2 149,152 + GFF5048 0.22 +0.9 149,152 + GFF5048 0.22 -0.2 149,152 + GFF5048 0.22 +1.9 149,152 + GFF5048 0.22 -0.2 149,152 + GFF5048 0.22 +0.3 149,152 + GFF5048 0.22 -0.1 149,152 + GFF5048 0.22 -2.1 149,152 + GFF5048 0.22 +1.3 149,152 + GFF5048 0.22 -2.0 149,153 - GFF5048 0.22 -0.3 149,153 - GFF5048 0.22 +2.7 149,153 - GFF5048 0.22 +0.2 149,153 - GFF5048 0.22 +0.4 149,153 - GFF5048 0.22 -0.6 149,153 - GFF5048 0.22 -1.6 149,153 - GFF5048 0.22 +0.6 149,153 - GFF5048 0.22 -0.7 149,153 - GFF5048 0.22 -0.7 149,153 - GFF5048 0.22 +1.4 149,153 - GFF5048 0.22 +0.7 149,153 - GFF5048 0.22 -2.2 149,153 - GFF5048 0.22 -0.9 149,153 - GFF5048 0.22 +1.0 149,156 + GFF5048 0.22 +1.6 149,156 + GFF5048 0.22 -0.4 149,156 + GFF5048 0.22 +1.1 149,156 + GFF5048 0.22 -0.9 149,156 + GFF5048 0.22 +0.5 149,156 + GFF5048 0.22 +0.5 149,156 + GFF5048 0.22 -0.3 149,156 + GFF5048 0.22 -0.9 149,156 + GFF5048 0.22 -0.9 149,156 + GFF5048 0.22 +0.0 149,156 + GFF5048 0.22 +0.7 149,157 - GFF5048 0.22 -0.6 149,157 - GFF5048 0.22 -0.3 149,157 - GFF5048 0.22 +0.3 149,157 - GFF5048 0.22 +0.9 149,157 - GFF5048 0.22 -0.3 149,157 - GFF5048 0.22 +0.2 149,157 - GFF5048 0.22 +1.7 149,157 - GFF5048 0.22 -0.3 149,157 - GFF5048 0.22 -0.2 149,157 - GFF5048 0.22 +0.5 149,157 - GFF5048 0.22 -1.3 149,393 + GFF5048 0.46 +1.3 149,393 + GFF5048 0.46 -0.4 149,393 + GFF5048 0.46 +0.3 149,393 + GFF5048 0.46 +1.3 149,393 + GFF5048 0.46 +2.6 149,394 - GFF5048 0.46 -1.8 149,394 - GFF5048 0.46 -0.7 149,454 + GFF5048 0.52 +0.0 149,455 - GFF5048 0.52 +0.0 149,455 - GFF5048 0.52 -0.9 149,534 + GFF5048 0.59 -1.6 149,534 + GFF5048 0.59 +2.1 149,534 + GFF5048 0.59 -0.1 149,534 + GFF5048 0.59 -1.6 149,534 + GFF5048 0.59 +1.7 149,535 - GFF5048 0.60 -0.9 149,535 - GFF5048 0.60 -0.4 149,535 - GFF5048 0.60 +0.6 149,655 + GFF5048 0.71 -0.7 149,655 + GFF5048 0.71 +3.1 149,655 + GFF5048 0.71 +0.6 149,655 + GFF5048 0.71 -0.8 149,655 + GFF5048 0.71 -0.9 149,655 + GFF5048 0.71 -2.3 149,656 - GFF5048 0.71 +1.0 149,656 - GFF5048 0.71 -0.9 149,656 - GFF5048 0.71 -0.9 149,656 - GFF5048 0.71 +2.0 149,700 + GFF5048 0.76 +0.8 149,700 + GFF5048 0.76 -0.7 149,700 + GFF5048 0.76 -0.8 149,700 + GFF5048 0.76 -3.3 149,700 + GFF5048 0.76 +0.1 149,700 + GFF5048 0.76 +0.7 149,700 + GFF5048 0.76 -1.2 149,700 + GFF5048 0.76 -0.2 149,700 + GFF5048 0.76 -2.1 149,700 + GFF5048 0.76 -1.4 149,700 + GFF5048 0.76 +1.3 149,700 + GFF5048 0.76 +2.9 149,700 + GFF5048 0.76 -1.5 149,700 + GFF5048 0.76 -2.5 149,700 + GFF5048 0.76 +2.3 149,700 + GFF5048 0.76 -2.8 149,700 + GFF5048 0.76 -0.9 149,700 + GFF5048 0.76 -2.3 149,700 + GFF5048 0.76 -0.6 149,700 + GFF5048 0.76 -0.4 149,701 + GFF5048 0.76 +0.0 149,701 - GFF5048 0.76 -0.2 149,701 - GFF5048 0.76 +0.1 149,701 - GFF5048 0.76 -1.2 149,701 - GFF5048 0.76 -0.2 149,701 - GFF5048 0.76 -0.6 149,701 - GFF5048 0.76 -1.1 149,701 - GFF5048 0.76 -2.2 149,701 - GFF5048 0.76 -0.3 149,701 - GFF5048 0.76 +0.6 149,701 - GFF5048 0.76 -0.4 149,701 - GFF5048 0.76 +0.6 149,701 - GFF5048 0.76 -3.8 149,701 - GFF5048 0.76 +2.8 149,701 - GFF5048 0.76 -0.1 149,701 - GFF5048 0.76 +0.7 149,701 - GFF5048 0.76 -0.7 149,701 - GFF5048 0.76 +0.7 149,701 - GFF5048 0.76 -0.6 149,701 - GFF5048 0.76 +0.6 149,701 - GFF5048 0.76 -0.3 149,701 - GFF5048 0.76 -0.4 149,701 - GFF5048 0.76 -0.5 149,701 - GFF5048 0.76 +0.7 149,851 + -0.7 149,852 - -1.6 149,852 - -1.5 149,891 + -0.8 149,891 + +0.4 149,892 - -1.5 149,892 - -1.0 149,893 + -0.1 149,893 + -0.2 149,893 + -0.6 149,893 + -2.7 149,893 + -3.6 149,893 + -1.6 149,893 + -0.1 149,893 + +1.9 149,893 + -0.2 149,893 + -0.1 149,894 - -2.5 149,894 - +0.3 149,894 - +0.4 149,894 - +0.1 149,894 - +2.3 149,894 - -1.9 149,917 - +0.3 149,947 + -2.0 149,947 + -0.7 149,947 + +0.5 149,947 + +1.2 149,947 + +1.0 149,947 + +1.6 149,948 - -1.5 149,948 - +2.4 149,948 - -3.2 149,948 - -1.1 149,948 - +0.9 149,948 - +1.0 149,948 - -0.8 149,948 - +0.9 149,948 - -2.8 149,959 + -0.3 149,959 + +0.3 149,959 + -1.3 149,960 - +0.1 150,003 + -0.1 150,003 + -0.6 150,003 + -0.5 150,003 + -2.1 150,003 + -1.4 150,004 - -1.2 150,004 - -2.2 150,004 - +2.4 150,004 - -0.8 150,004 - +0.3 150,653 - GFF5049 0.82 +2.3 150,653 - GFF5049 0.82 -2.5 150,741 + -0.8 150,741 + +0.6 150,741 + +1.1 150,741 + -0.1 150,741 + +0.3 150,741 + +0.3 150,742 - -1.3 150,742 - -0.4 150,742 - -0.7 150,742 - +0.3 150,742 - +0.6 150,742 - +0.0 150,742 - +0.2 151,182 + GFF5050 0.46 -0.4 151,182 + GFF5050 0.46 +1.1 151,182 + GFF5050 0.46 -2.0 151,182 + GFF5050 0.46 -0.1 151,182 + GFF5050 0.46 -0.2 151,182 + GFF5050 0.46 +0.0 151,182 + GFF5050 0.46 -2.1 151,182 + GFF5050 0.46 +0.5 151,182 + GFF5050 0.46 -3.5 151,183 - GFF5050 0.47 +0.7 151,183 - GFF5050 0.47 -1.3 151,183 - GFF5050 0.47 -0.7 151,183 - GFF5050 0.47 -0.1 151,183 - GFF5050 0.47 -0.6 151,183 - GFF5050 0.47 -2.0 151,324 + GFF5050 0.63 -1.4 151,324 + GFF5050 0.63 -1.4 151,324 + GFF5050 0.63 +0.7 151,324 + GFF5050 0.63 -0.1 151,434 + GFF5050 0.76 -0.1 151,434 + GFF5050 0.76 -0.5 151,434 + GFF5050 0.76 -0.7 151,434 + GFF5050 0.76 -0.1 151,435 - GFF5050 0.76 -2.5 151,435 - GFF5050 0.76 -0.7 151,435 - GFF5050 0.76 +0.1 151,435 - GFF5050 0.76 -2.3 151,435 - GFF5050 0.76 -0.9 151,491 + GFF5050 0.82 -0.5 151,491 + GFF5050 0.82 +1.1 151,491 + GFF5050 0.82 +1.7 151,491 + GFF5050 0.82 -0.8 151,491 + GFF5050 0.82 -1.3 151,491 + GFF5050 0.82 -0.1 151,491 + GFF5050 0.82 -1.3 151,491 + GFF5050 0.82 -0.1 151,491 + GFF5050 0.82 -0.8 151,492 - GFF5050 0.82 +0.2 151,492 - GFF5050 0.82 -0.9 151,492 - GFF5050 0.82 -2.2 151,492 - GFF5050 0.82 -1.3 151,492 - GFF5050 0.82 +0.3 151,492 - GFF5050 0.82 +2.1 151,492 - GFF5050 0.82 +0.3 151,492 - GFF5050 0.82 -2.2 151,492 - GFF5050 0.82 +1.5 151,492 - GFF5050 0.82 +0.5 151,492 - GFF5050 0.82 -1.1 151,492 - GFF5050 0.82 -0.3 151,685 + +0.5 151,685 + -1.5 151,685 + -0.5 151,685 + -1.3 151,686 - +0.2 151,686 - +0.1 151,692 + -0.1 151,708 + -3.4 151,708 + -2.8 151,708 + -2.9 151,708 + -1.5 151,709 - -0.5
Or see this region's nucleotide sequence