Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5043 and GFF5044 are separated by 4 nucleotides GFF5044 and GFF5045 are separated by 16 nucleotides GFF5045 and GFF5046 are separated by 18 nucleotides GFF5046 and GFF5047 are separated by 28 nucleotides
GFF5043 - ABC transporter, permease protein (cluster 9, phospholipid), at 144,932 to 146,098
GFF5043
GFF5044 - ABC transporter, ATP-binding protein (cluster 9, phospholipid), at 146,103 to 146,948
GFF5044
GFF5045 - ABC transporter, substrate-binding protein (cluster 9, phospholipid), at 146,965 to 147,924
GFF5045
GFF5046 - putative lipoprotein, at 147,943 to 148,656
GFF5046
GFF5047 - hypothetical protein, at 148,685 to 148,906
GFF5047
Position (kb) 146
147
148 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 146.029 kb on + strand at 146.029 kb on + strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.030 kb on - strand at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.847 kb on + strand, within GFF5044 at 146.848 kb on - strand, within GFF5044 at 146.848 kb on - strand, within GFF5044 at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.953 kb on + strand at 146.954 kb on - strand at 146.954 kb on - strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.957 kb on + strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.958 kb on - strand at 146.969 kb on - strand at 147.076 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.262 kb on + strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.263 kb on - strand, within GFF5045 at 147.737 kb on - strand, within GFF5045 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.022 kb on + strand, within GFF5046 at 148.023 kb on - strand, within GFF5046 at 148.087 kb on + strand, within GFF5046 at 148.088 kb on - strand, within GFF5046 at 148.423 kb on + strand, within GFF5046 at 148.423 kb on + strand, within GFF5046 at 148.424 kb on - strand, within GFF5046 at 148.424 kb on - strand, within GFF5046 at 148.424 kb on - strand, within GFF5046 at 148.654 kb on + strand at 148.654 kb on + strand at 148.655 kb on - strand at 148.655 kb on - strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.679 kb on + strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.680 kb on - strand at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.863 kb on + strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 148.864 kb on - strand, within GFF5047 at 148.864 kb on - strand, within GFF5047
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 146,029 + +0.5 146,029 + +0.3 146,030 - +0.0 146,030 - -1.4 146,030 - +1.8 146,030 - -0.5 146,847 + GFF5044 0.88 +0.4 146,847 + GFF5044 0.88 +1.0 146,847 + GFF5044 0.88 -2.4 146,847 + GFF5044 0.88 +0.3 146,848 - GFF5044 0.88 -1.2 146,848 - GFF5044 0.88 -2.0 146,953 + -1.6 146,953 + +0.2 146,953 + -0.3 146,953 + -0.1 146,953 + -0.6 146,953 + +1.0 146,954 - -0.9 146,954 - +0.3 146,957 + -0.7 146,957 + -0.3 146,957 + +1.2 146,957 + -0.9 146,957 + -1.5 146,958 - +1.0 146,958 - +0.9 146,958 - -1.4 146,958 - +0.2 146,958 - +0.3 146,958 - -2.0 146,958 - -1.9 146,958 - +0.7 146,958 - -0.6 146,969 - -0.9 147,076 + GFF5045 0.12 -0.8 147,262 + GFF5045 0.31 -2.9 147,262 + GFF5045 0.31 +1.0 147,262 + GFF5045 0.31 +0.7 147,262 + GFF5045 0.31 -1.4 147,263 - GFF5045 0.31 +0.0 147,263 - GFF5045 0.31 -2.3 147,263 - GFF5045 0.31 -0.5 147,263 - GFF5045 0.31 -1.2 147,737 - GFF5045 0.80 -0.8 148,022 + GFF5046 0.11 -1.1 148,022 + GFF5046 0.11 +1.3 148,022 + GFF5046 0.11 -0.1 148,022 + GFF5046 0.11 +1.4 148,022 + GFF5046 0.11 -3.7 148,022 + GFF5046 0.11 +0.4 148,023 - GFF5046 0.11 -2.0 148,087 + GFF5046 0.20 -1.2 148,088 - GFF5046 0.20 -1.6 148,423 + GFF5046 0.67 -2.5 148,423 + GFF5046 0.67 -0.5 148,424 - GFF5046 0.67 +0.6 148,424 - GFF5046 0.67 -1.8 148,424 - GFF5046 0.67 -1.3 148,654 + +1.4 148,654 + +0.3 148,655 - +0.3 148,655 - -3.3 148,679 + -1.3 148,679 + -1.4 148,679 + -1.0 148,679 + -0.3 148,679 + -0.3 148,679 + -0.3 148,679 + +0.8 148,679 + -4.0 148,679 + -0.2 148,679 + +2.0 148,679 + -1.6 148,679 + -2.2 148,679 + +0.3 148,679 + +0.8 148,680 - -1.4 148,680 - +1.0 148,680 - +0.0 148,680 - +2.4 148,680 - +1.4 148,680 - -0.2 148,680 - +1.0 148,680 - -0.2 148,680 - -0.3 148,680 - -0.1 148,680 - +0.3 148,680 - +0.3 148,680 - -0.6 148,680 - -2.3 148,680 - -1.8 148,680 - +1.3 148,863 + GFF5047 0.80 +0.7 148,863 + GFF5047 0.80 +0.0 148,863 + GFF5047 0.80 -1.0 148,863 + GFF5047 0.80 -2.8 148,863 + GFF5047 0.80 -3.2 148,863 + GFF5047 0.80 -1.2 148,863 + GFF5047 0.80 -2.1 148,864 - GFF5047 0.81 -2.2 148,864 - GFF5047 0.81 +0.2 148,864 - GFF5047 0.81 -1.2 148,864 - GFF5047 0.81 -0.9
Or see this region's nucleotide sequence