Strain Fitness in Variovorax sp. SCN45 around GFF5044

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5043 and GFF5044 are separated by 4 nucleotidesGFF5044 and GFF5045 are separated by 16 nucleotidesGFF5045 and GFF5046 are separated by 18 nucleotides GFF5043 - ABC transporter, permease protein (cluster 9, phospholipid), at 144,932 to 146,098 GFF5043 GFF5044 - ABC transporter, ATP-binding protein (cluster 9, phospholipid), at 146,103 to 146,948 GFF5044 GFF5045 - ABC transporter, substrate-binding protein (cluster 9, phospholipid), at 146,965 to 147,924 GFF5045 GFF5046 - putative lipoprotein, at 147,943 to 148,656 GFF5046 Position (kb) 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.259 kb on + strand, within GFF5043at 145.260 kb on - strand, within GFF5043at 145.260 kb on - strand, within GFF5043at 145.260 kb on - strand, within GFF5043at 145.260 kb on - strand, within GFF5043at 145.260 kb on - strand, within GFF5043at 145.260 kb on - strand, within GFF5043at 145.451 kb on + strand, within GFF5043at 145.452 kb on - strand, within GFF5043at 145.452 kb on - strand, within GFF5043at 145.452 kb on - strand, within GFF5043at 145.497 kb on + strand, within GFF5043at 145.498 kb on - strand, within GFF5043at 145.498 kb on - strand, within GFF5043at 145.520 kb on + strand, within GFF5043at 145.521 kb on - strand, within GFF5043at 145.521 kb on - strand, within GFF5043at 145.521 kb on - strand, within GFF5043at 145.521 kb on - strand, within GFF5043at 145.716 kb on + strand, within GFF5043at 145.716 kb on + strand, within GFF5043at 145.843 kb on + strand, within GFF5043at 145.843 kb on + strand, within GFF5043at 145.843 kb on + strand, within GFF5043at 145.843 kb on + strand, within GFF5043at 145.843 kb on + strand, within GFF5043at 145.843 kb on + strand, within GFF5043at 145.844 kb on - strand, within GFF5043at 145.844 kb on - strand, within GFF5043at 145.856 kb on + strand, within GFF5043at 145.888 kb on + strand, within GFF5043at 145.888 kb on + strand, within GFF5043at 145.888 kb on + strand, within GFF5043at 145.888 kb on + strand, within GFF5043at 145.889 kb on - strand, within GFF5043at 145.889 kb on - strand, within GFF5043at 145.889 kb on - strand, within GFF5043at 145.958 kb on + strand, within GFF5043at 145.958 kb on + strand, within GFF5043at 145.958 kb on + strand, within GFF5043at 145.958 kb on + strand, within GFF5043at 145.959 kb on - strand, within GFF5043at 145.959 kb on - strand, within GFF5043at 145.959 kb on - strand, within GFF5043at 145.959 kb on - strand, within GFF5043at 145.959 kb on - strand, within GFF5043at 145.959 kb on - strand, within GFF5043at 146.029 kb on + strandat 146.029 kb on + strandat 146.030 kb on - strandat 146.030 kb on - strandat 146.030 kb on - strandat 146.030 kb on - strandat 146.847 kb on + strand, within GFF5044at 146.847 kb on + strand, within GFF5044at 146.847 kb on + strand, within GFF5044at 146.847 kb on + strand, within GFF5044at 146.848 kb on - strand, within GFF5044at 146.848 kb on - strand, within GFF5044at 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.953 kb on + strandat 146.954 kb on - strandat 146.954 kb on - strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.957 kb on + strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.958 kb on - strandat 146.969 kb on - strandat 147.076 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.262 kb on + strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.263 kb on - strand, within GFF5045at 147.737 kb on - strand, within GFF5045

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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145,259 + GFF5043 0.28 -1.1
145,259 + GFF5043 0.28 +1.2
145,259 + GFF5043 0.28 -1.2
145,259 + GFF5043 0.28 +0.6
145,259 + GFF5043 0.28 -1.8
145,259 + GFF5043 0.28 +0.2
145,259 + GFF5043 0.28 -0.9
145,259 + GFF5043 0.28 -1.7
145,259 + GFF5043 0.28 -1.4
145,260 - GFF5043 0.28 +0.1
145,260 - GFF5043 0.28 +1.5
145,260 - GFF5043 0.28 +3.3
145,260 - GFF5043 0.28 +0.5
145,260 - GFF5043 0.28 +0.2
145,260 - GFF5043 0.28 +1.4
145,451 + GFF5043 0.44 -2.8
145,452 - GFF5043 0.45 -0.6
145,452 - GFF5043 0.45 -2.9
145,452 - GFF5043 0.45 -0.7
145,497 + GFF5043 0.48 +0.4
145,498 - GFF5043 0.49 +0.3
145,498 - GFF5043 0.49 +0.5
145,520 + GFF5043 0.50 -1.9
145,521 - GFF5043 0.50 -0.5
145,521 - GFF5043 0.50 +0.1
145,521 - GFF5043 0.50 +0.3
145,521 - GFF5043 0.50 +0.9
145,716 + GFF5043 0.67 -0.5
145,716 + GFF5043 0.67 +2.6
145,843 + GFF5043 0.78 -0.4
145,843 + GFF5043 0.78 -1.5
145,843 + GFF5043 0.78 +0.7
145,843 + GFF5043 0.78 -1.6
145,843 + GFF5043 0.78 -1.7
145,843 + GFF5043 0.78 -0.7
145,844 - GFF5043 0.78 -1.1
145,844 - GFF5043 0.78 -2.5
145,856 + GFF5043 0.79 +1.4
145,888 + GFF5043 0.82 -1.8
145,888 + GFF5043 0.82 -0.1
145,888 + GFF5043 0.82 +0.7
145,888 + GFF5043 0.82 +0.2
145,889 - GFF5043 0.82 -0.8
145,889 - GFF5043 0.82 +2.3
145,889 - GFF5043 0.82 -0.7
145,958 + GFF5043 0.88 +0.4
145,958 + GFF5043 0.88 -1.2
145,958 + GFF5043 0.88 -1.5
145,958 + GFF5043 0.88 -0.2
145,959 - GFF5043 0.88 -0.8
145,959 - GFF5043 0.88 -0.3
145,959 - GFF5043 0.88 -0.4
145,959 - GFF5043 0.88 -2.4
145,959 - GFF5043 0.88 -2.1
145,959 - GFF5043 0.88 +0.1
146,029 + +0.5
146,029 + +0.3
146,030 - +0.0
146,030 - -1.4
146,030 - +1.8
146,030 - -0.5
146,847 + GFF5044 0.88 +0.4
146,847 + GFF5044 0.88 +1.0
146,847 + GFF5044 0.88 -2.4
146,847 + GFF5044 0.88 +0.3
146,848 - GFF5044 0.88 -1.2
146,848 - GFF5044 0.88 -2.0
146,953 + -1.6
146,953 + +0.2
146,953 + -0.3
146,953 + -0.1
146,953 + -0.6
146,953 + +1.0
146,954 - -0.9
146,954 - +0.3
146,957 + -0.7
146,957 + -0.3
146,957 + +1.2
146,957 + -0.9
146,957 + -1.5
146,958 - +1.0
146,958 - +0.9
146,958 - -1.4
146,958 - +0.2
146,958 - +0.3
146,958 - -2.0
146,958 - -1.9
146,958 - +0.7
146,958 - -0.6
146,969 - -0.9
147,076 + GFF5045 0.12 -0.8
147,262 + GFF5045 0.31 -2.9
147,262 + GFF5045 0.31 +1.0
147,262 + GFF5045 0.31 +0.7
147,262 + GFF5045 0.31 -1.4
147,263 - GFF5045 0.31 +0.0
147,263 - GFF5045 0.31 -2.3
147,263 - GFF5045 0.31 -0.5
147,263 - GFF5045 0.31 -1.2
147,737 - GFF5045 0.80 -0.8

Or see this region's nucleotide sequence