Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4962 and GFF4963 are separated by 76 nucleotides GFF4963 and GFF4964 are separated by 63 nucleotides
GFF4962 - Multidrug resistance transporter, Bcr/CflA family, at 62,268 to 63,476
GFF4962
GFF4963 - Transcriptional regulator, AraC family, at 63,553 to 64,503
GFF4963
GFF4964 - Sulfate permease, at 64,567 to 66,030
GFF4964
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 62.599 kb on - strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.599 kb on - strand, within GFF4962 at 62.726 kb on - strand, within GFF4962 at 62.726 kb on - strand, within GFF4962 at 62.782 kb on + strand, within GFF4962 at 62.783 kb on - strand, within GFF4962 at 62.860 kb on + strand, within GFF4962 at 63.047 kb on + strand, within GFF4962 at 63.047 kb on + strand, within GFF4962 at 63.048 kb on - strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.049 kb on + strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.050 kb on - strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.097 kb on + strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.098 kb on - strand, within GFF4962 at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.652 kb on + strand, within GFF4963 at 63.863 kb on - strand, within GFF4963 at 63.863 kb on - strand, within GFF4963 at 64.312 kb on + strand, within GFF4963 at 64.313 kb on - strand, within GFF4963 at 64.467 kb on + strand at 64.501 kb on + strand at 64.501 kb on + strand at 64.501 kb on + strand at 64.501 kb on + strand at 64.502 kb on - strand at 64.568 kb on + strand at 64.815 kb on - strand, within GFF4964 at 65.162 kb on + strand, within GFF4964 at 65.163 kb on - strand, within GFF4964 at 65.163 kb on - strand, within GFF4964
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 62,599 - GFF4962 0.27 -0.1 62,599 - GFF4962 0.27 -0.7 62,599 - GFF4962 0.27 -0.3 62,726 - GFF4962 0.38 +1.3 62,726 - GFF4962 0.38 +0.3 62,782 + GFF4962 0.43 +0.7 62,783 - GFF4962 0.43 -3.2 62,860 + GFF4962 0.49 +2.5 63,047 + GFF4962 0.64 -0.7 63,047 + GFF4962 0.64 -1.0 63,048 - GFF4962 0.65 -0.3 63,049 + GFF4962 0.65 -0.8 63,049 + GFF4962 0.65 +1.1 63,049 + GFF4962 0.65 +1.6 63,049 + GFF4962 0.65 +0.5 63,050 - GFF4962 0.65 +0.0 63,050 - GFF4962 0.65 +0.7 63,050 - GFF4962 0.65 +0.2 63,050 - GFF4962 0.65 -3.0 63,097 + GFF4962 0.69 -0.5 63,097 + GFF4962 0.69 +0.9 63,097 + GFF4962 0.69 -1.1 63,098 - GFF4962 0.69 -0.1 63,098 - GFF4962 0.69 +0.2 63,098 - GFF4962 0.69 -0.3 63,391 + -2.6 63,391 + +1.0 63,391 + -0.5 63,391 + -0.8 63,391 + -0.4 63,391 + -0.9 63,392 - -0.6 63,392 - -1.7 63,392 - -3.1 63,392 - -0.8 63,392 - +0.5 63,392 - +0.1 63,392 - +1.2 63,392 - +1.5 63,392 - -1.1 63,652 + GFF4963 0.10 -0.3 63,863 - GFF4963 0.33 +0.7 63,863 - GFF4963 0.33 -0.5 64,312 + GFF4963 0.80 +3.4 64,313 - GFF4963 0.80 +1.0 64,467 + -0.2 64,501 + +3.1 64,501 + -0.5 64,501 + +0.1 64,501 + +0.6 64,502 - +1.4 64,568 + -0.6 64,815 - GFF4964 0.17 +1.0 65,162 + GFF4964 0.41 -1.2 65,163 - GFF4964 0.41 -0.5 65,163 - GFF4964 0.41 +0.6
Or see this region's nucleotide sequence