Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4931 and GFF4932 are separated by 13 nucleotides GFF4932 and GFF4933 overlap by 11 nucleotides GFF4933 and GFF4934 overlap by 8 nucleotides GFF4934 and GFF4935 overlap by 4 nucleotides
GFF4931 - peptidase, family M14, at 24,171 to 25,904
GFF4931
GFF4932 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 25,918 to 26,727
GFF4932
GFF4933 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 26,717 to 27,565
GFF4933
GFF4934 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 27,558 to 28,454
GFF4934
GFF4935 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 28,451 to 29,473
GFF4935
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.813 kb on + strand at 25.813 kb on + strand at 25.813 kb on + strand at 25.814 kb on - strand at 25.880 kb on - strand at 25.880 kb on - strand at 25.953 kb on - strand at 25.980 kb on - strand at 25.980 kb on - strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.826 kb on + strand, within GFF4933 at 26.826 kb on + strand, within GFF4933 at 26.827 kb on - strand, within GFF4933 at 26.827 kb on - strand, within GFF4933 at 26.887 kb on - strand, within GFF4933 at 27.121 kb on - strand, within GFF4933 at 27.121 kb on - strand, within GFF4933 at 27.361 kb on - strand, within GFF4933 at 27.528 kb on + strand at 27.579 kb on + strand at 27.579 kb on + strand at 27.579 kb on + strand at 27.580 kb on - strand at 27.580 kb on - strand at 27.580 kb on - strand at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.676 kb on + strand, within GFF4934 at 27.677 kb on - strand, within GFF4934 at 27.677 kb on - strand, within GFF4934 at 27.677 kb on - strand, within GFF4934 at 28.084 kb on + strand, within GFF4934 at 28.085 kb on - strand, within GFF4934 at 28.171 kb on + strand, within GFF4934 at 28.172 kb on - strand, within GFF4934
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 25,813 + +1.9 25,813 + -2.6 25,813 + +0.3 25,814 - -0.1 25,880 - -0.6 25,880 - -1.0 25,953 - +0.7 25,980 - -0.0 25,980 - +0.3 26,657 + +0.3 26,657 + -1.3 26,657 + +0.9 26,657 + +0.6 26,826 + GFF4933 0.13 +0.2 26,826 + GFF4933 0.13 +0.7 26,827 - GFF4933 0.13 +1.3 26,827 - GFF4933 0.13 -0.7 26,887 - GFF4933 0.20 +0.7 27,121 - GFF4933 0.48 +1.3 27,121 - GFF4933 0.48 +0.3 27,361 - GFF4933 0.76 -0.5 27,528 + -0.9 27,579 + -0.9 27,579 + -0.5 27,579 + +1.3 27,580 - -1.3 27,580 - +0.7 27,580 - +2.0 27,676 + GFF4934 0.13 -1.3 27,676 + GFF4934 0.13 -1.7 27,676 + GFF4934 0.13 -2.0 27,676 + GFF4934 0.13 +0.7 27,676 + GFF4934 0.13 -0.6 27,676 + GFF4934 0.13 +1.4 27,676 + GFF4934 0.13 -0.1 27,676 + GFF4934 0.13 +1.1 27,676 + GFF4934 0.13 -0.1 27,676 + GFF4934 0.13 +0.6 27,677 - GFF4934 0.13 +0.9 27,677 - GFF4934 0.13 +0.7 27,677 - GFF4934 0.13 -1.1 28,084 + GFF4934 0.59 -1.2 28,085 - GFF4934 0.59 +0.1 28,171 + GFF4934 0.68 +1.6 28,172 - GFF4934 0.68 -0.8
Or see this region's nucleotide sequence