Strain Fitness in Variovorax sp. SCN45 around GFF4705

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
68,231	+		GFF4704	0.21	+2.3
68,231	+		GFF4704	0.21	+1.9
68,231	+		GFF4704	0.21	+2.4
68,231	+		GFF4704	0.21	+0.2
68,231	+		GFF4704	0.21	-1.5
68,342	+		GFF4704	0.34	+1.4
68,550	-		GFF4704	0.59	+0.3
68,615	+		GFF4704	0.67	-2.0
68,615	+		GFF4704	0.67	-0.7
68,615	+		GFF4704	0.67	-1.6
68,615	+		GFF4704	0.67	-1.2
68,615	+		GFF4704	0.67	+2.3
68,615	+		GFF4704	0.67	+0.3
68,615	+		GFF4704	0.67	-0.6
68,616	-		GFF4704	0.67	+0.2
68,616	-		GFF4704	0.67	-1.6
68,616	-		GFF4704	0.67	-3.3
68,616	-		GFF4704	0.67	-1.6
68,616	-		GFF4704	0.67	+0.2
68,617	+		GFF4704	0.68	+0.4
69,052	+		GFF4705	0.13	-1.9
69,053	-		GFF4705	0.13	+1.3
69,053	-		GFF4705	0.13	-1.4
69,053	-		GFF4705	0.13	-0.3
69,053	-		GFF4705	0.13	-2.2
69,053	-		GFF4705	0.13	-0.1
69,053	-		GFF4705	0.13	-0.3
69,130	+		GFF4705	0.19	-1.8
69,158	-		GFF4705	0.21	-3.2
69,307	+		GFF4705	0.32	-1.0
69,308	-		GFF4705	0.32	-1.9
69,403	+		GFF4705	0.39	-1.8
69,403	+		GFF4705	0.39	+1.1
69,404	-		GFF4705	0.39	+1.1
69,493	+		GFF4705	0.46	-1.1
69,530	-		GFF4705	0.49	+0.1
69,530	-		GFF4705	0.49	+0.1
69,530	-		GFF4705	0.49	-0.8
69,532	+		GFF4705	0.49	-0.3
69,532	+		GFF4705	0.49	-2.2
69,532	+		GFF4705	0.49	+0.5
69,533	-		GFF4705	0.49	+0.7
69,533	-		GFF4705	0.49	-0.3
69,533	-		GFF4705	0.49	-0.5
69,547	+		GFF4705	0.50	-1.4
69,547	+		GFF4705	0.50	-2.0
69,547	+		GFF4705	0.50	-2.5
69,548	-		GFF4705	0.50	-0.7
69,548	-		GFF4705	0.50	-1.5
69,548	-		GFF4705	0.50	+1.1
69,548	-		GFF4705	0.50	+0.2
69,548	-		GFF4705	0.50	+0.2
69,548	-		GFF4705	0.50	-0.1
69,548	-		GFF4705	0.50	+3.1
69,682	+		GFF4705	0.60	-1.4
69,682	+		GFF4705	0.60	-2.8
69,683	-		GFF4705	0.60	-1.0
69,683	-		GFF4705	0.60	+4.0
69,683	-		GFF4705	0.60	-1.2
69,691	+		GFF4705	0.61	+0.3
69,691	+		GFF4705	0.61	-0.3
69,691	+		GFF4705	0.61	-1.1
69,691	+		GFF4705	0.61	+0.4
69,691	+		GFF4705	0.61	+0.4
69,691	+		GFF4705	0.61	-0.6
69,691	+		GFF4705	0.61	-1.5
69,692	-		GFF4705	0.61	-2.5
69,692	-		GFF4705	0.61	-0.3
69,692	-		GFF4705	0.61	-1.3
69,692	-		GFF4705	0.61	-2.6
69,692	-		GFF4705	0.61	-0.6
69,692	-		GFF4705	0.61	-1.6
69,692	-		GFF4705	0.61	-0.2
69,692	-		GFF4705	0.61	-3.0
69,692	-		GFF4705	0.61	+2.1
69,820	+		GFF4705	0.70	+0.5
69,821	-		GFF4705	0.71	+0.1
69,821	-		GFF4705	0.71	-1.8
69,821	-		GFF4705	0.71	-0.9
69,847	+		GFF4705	0.72	-1.4
69,847	+		GFF4705	0.72	-0.7
69,847	+		GFF4705	0.72	+0.4
69,847	+		GFF4705	0.72	-3.6
69,859	+		GFF4705	0.73	+0.1
69,913	+		GFF4705	0.77	-0.7
69,913	+		GFF4705	0.77	-0.4
69,913	+		GFF4705	0.77	-0.0
69,914	-		GFF4705	0.78	+1.2
69,914	-		GFF4705	0.78	+0.2
70,025	-		GFF4705	0.86	-0.6
70,141	+				-2.2
70,141	+				-0.4
70,141	+				-1.0
70,141	+				+0.7
70,142	-				-1.1
70,142	-				+1.3
70,144	+				-0.9
70,144	+				-3.8
70,144	+				+0.8
70,144	+				+1.9
70,145	-				-1.3
70,145	-				+0.0
70,145	-				-0.6
70,145	-				+1.4
70,145	-				+1.7
70,145	-				+0.8
70,145	-				-3.4
70,145	-				-0.5
70,145	-				-0.1
70,163	-				-1.6
70,263	+				+0.9
70,263	+				-2.5
70,263	+				-1.3
70,264	-				-1.7
70,264	-				-1.8
70,264	-				-0.6
70,264	-				-0.3
70,264	-				+2.5
70,868	+		GFF4706	0.69	-0.6
70,868	+		GFF4706	0.69	-0.6
70,868	+		GFF4706	0.69	+2.7
70,868	+		GFF4706	0.69	+0.9
70,868	+		GFF4706	0.69	-0.3
70,869	-		GFF4706	0.69	-2.5
70,869	-		GFF4706	0.69	-0.4
70,869	-		GFF4706	0.69	-2.2
70,962	-		GFF4706	0.80	-0.1