Strain Fitness in Variovorax sp. SCN45 around GFF4697

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4695 and GFF4696 are separated by 121 nucleotidesGFF4696 and GFF4697 are separated by 104 nucleotidesGFF4697 and GFF4698 are separated by 59 nucleotides GFF4695 - Molybdopterin adenylyltransferase (EC 2.7.7.75), at 58,679 to 59,269 GFF4695 GFF4696 - UPF0307 protein YjgA, at 59,391 to 60,047 GFF4696 GFF4697 - TldE protein, part of TldE/TldD proteolytic complex, at 60,152 to 61,522 GFF4697 GFF4698 - Transcriptional regulator of various polyols utilization, AraC family, at 61,582 to 62,532 GFF4698 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.202 kb on + strand, within GFF4695at 59.202 kb on + strand, within GFF4695at 59.250 kb on - strandat 60.022 kb on + strandat 60.114 kb on - strandat 60.137 kb on + strandat 60.137 kb on + strandat 60.137 kb on + strandat 60.137 kb on + strandat 60.137 kb on + strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.138 kb on - strandat 60.142 kb on + strandat 60.142 kb on + strandat 60.142 kb on + strandat 60.142 kb on + strandat 60.143 kb on - strandat 60.191 kb on + strandat 60.191 kb on + strandat 60.191 kb on + strandat 60.368 kb on + strand, within GFF4697at 60.369 kb on - strand, within GFF4697at 60.369 kb on - strand, within GFF4697at 60.369 kb on - strand, within GFF4697at 60.369 kb on - strand, within GFF4697at 60.369 kb on - strand, within GFF4697at 60.446 kb on + strand, within GFF4697at 60.446 kb on + strand, within GFF4697at 60.446 kb on + strand, within GFF4697at 60.446 kb on + strand, within GFF4697at 60.447 kb on - strand, within GFF4697at 60.447 kb on - strand, within GFF4697at 60.701 kb on + strand, within GFF4697at 60.776 kb on + strand, within GFF4697at 60.776 kb on + strand, within GFF4697at 60.777 kb on - strand, within GFF4697at 60.777 kb on - strand, within GFF4697at 60.830 kb on + strand, within GFF4697at 60.965 kb on + strand, within GFF4697at 60.966 kb on - strand, within GFF4697at 60.966 kb on - strand, within GFF4697at 61.136 kb on + strand, within GFF4697at 61.136 kb on + strand, within GFF4697at 61.137 kb on - strand, within GFF4697at 61.137 kb on - strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.151 kb on + strand, within GFF4697at 61.152 kb on - strand, within GFF4697at 61.152 kb on - strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.316 kb on + strand, within GFF4697at 61.317 kb on - strand, within GFF4697at 61.317 kb on - strand, within GFF4697at 61.317 kb on - strand, within GFF4697at 61.332 kb on - strand, within GFF4697at 61.332 kb on - strand, within GFF4697at 61.332 kb on - strand, within GFF4697at 61.457 kb on + strandat 61.457 kb on + strandat 61.457 kb on + strandat 61.457 kb on + strandat 61.457 kb on + strandat 61.458 kb on - strandat 61.458 kb on - strandat 61.458 kb on - strandat 61.720 kb on + strand, within GFF4698at 61.721 kb on - strand, within GFF4698at 61.732 kb on + strand, within GFF4698at 61.733 kb on - strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.808 kb on - strand, within GFF4698at 62.188 kb on + strand, within GFF4698at 62.188 kb on + strand, within GFF4698at 62.189 kb on - strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.384 kb on - strand, within GFF4698at 62.384 kb on - strand, within GFF4698at 62.459 kb on - strandat 62.459 kb on - strandat 62.464 kb on + strandat 62.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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59,202 + GFF4695 0.88 -0.5
59,202 + GFF4695 0.88 +0.7
59,250 - +1.6
60,022 + +0.7
60,114 - +0.6
60,137 + +2.1
60,137 + -1.2
60,137 + -0.6
60,137 + +0.9
60,137 + +1.2
60,138 - -0.0
60,138 - +0.7
60,138 - -1.3
60,138 - -0.2
60,138 - +1.1
60,138 - +1.4
60,138 - +0.7
60,138 - +1.9
60,138 - -0.8
60,138 - +1.6
60,138 - -0.3
60,138 - -0.1
60,142 + +1.5
60,142 + -1.9
60,142 + +0.4
60,142 + -1.8
60,143 - -1.3
60,191 + -1.3
60,191 + -1.2
60,191 + -2.3
60,368 + GFF4697 0.16 -2.2
60,369 - GFF4697 0.16 -1.3
60,369 - GFF4697 0.16 -2.8
60,369 - GFF4697 0.16 +0.0
60,369 - GFF4697 0.16 -2.0
60,369 - GFF4697 0.16 -0.2
60,446 + GFF4697 0.21 -2.6
60,446 + GFF4697 0.21 -1.5
60,446 + GFF4697 0.21 +0.1
60,446 + GFF4697 0.21 -1.8
60,447 - GFF4697 0.22 -1.5
60,447 - GFF4697 0.22 +2.3
60,701 + GFF4697 0.40 -2.8
60,776 + GFF4697 0.46 -0.1
60,776 + GFF4697 0.46 -3.0
60,777 - GFF4697 0.46 -0.9
60,777 - GFF4697 0.46 -2.2
60,830 + GFF4697 0.49 -0.3
60,965 + GFF4697 0.59 -0.4
60,966 - GFF4697 0.59 -1.8
60,966 - GFF4697 0.59 -0.4
61,136 + GFF4697 0.72 -0.8
61,136 + GFF4697 0.72 -0.7
61,137 - GFF4697 0.72 +0.1
61,137 - GFF4697 0.72 -2.8
61,151 + GFF4697 0.73 -0.8
61,151 + GFF4697 0.73 +0.2
61,151 + GFF4697 0.73 -3.1
61,151 + GFF4697 0.73 -0.5
61,151 + GFF4697 0.73 +0.6
61,151 + GFF4697 0.73 -0.4
61,152 - GFF4697 0.73 +0.1
61,152 - GFF4697 0.73 -0.6
61,316 + GFF4697 0.85 +1.2
61,316 + GFF4697 0.85 +0.1
61,316 + GFF4697 0.85 -3.1
61,316 + GFF4697 0.85 -2.8
61,316 + GFF4697 0.85 -0.6
61,316 + GFF4697 0.85 -1.8
61,317 - GFF4697 0.85 -1.6
61,317 - GFF4697 0.85 -1.6
61,317 - GFF4697 0.85 -0.6
61,332 - GFF4697 0.86 +0.5
61,332 - GFF4697 0.86 +0.4
61,332 - GFF4697 0.86 -0.1
61,457 + +2.0
61,457 + -0.8
61,457 + +0.0
61,457 + -2.1
61,457 + -0.9
61,458 - -0.1
61,458 - +0.6
61,458 - +1.5
61,720 + GFF4698 0.15 -2.3
61,721 - GFF4698 0.15 +0.1
61,732 + GFF4698 0.16 +2.4
61,733 - GFF4698 0.16 -1.7
61,807 + GFF4698 0.24 +0.4
61,807 + GFF4698 0.24 -1.4
61,807 + GFF4698 0.24 -3.5
61,808 - GFF4698 0.24 +0.8
62,188 + GFF4698 0.64 +0.4
62,188 + GFF4698 0.64 -1.1
62,189 - GFF4698 0.64 -0.9
62,383 + GFF4698 0.84 -1.6
62,383 + GFF4698 0.84 -2.1
62,383 + GFF4698 0.84 -0.1
62,383 + GFF4698 0.84 -2.1
62,383 + GFF4698 0.84 +0.5
62,383 + GFF4698 0.84 +0.7
62,383 + GFF4698 0.84 -1.9
62,384 - GFF4698 0.84 -0.3
62,384 - GFF4698 0.84 -0.3
62,459 - -0.0
62,459 - +1.3
62,464 + +0.7
62,465 - +0.0

Or see this region's nucleotide sequence