Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4596 and GFF4597 are separated by 110 nucleotides GFF4597 and GFF4598 are separated by 42 nucleotides
GFF4596 - Amidase family protein BDAG_03520, at 237,222 to 238,664
GFF4596
GFF4597 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 238,775 to 239,713
GFF4597
GFF4598 - Efflux ABC transporter, permease/ATP-binding protein mlr7818, at 239,756 to 241,588
GFF4598
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 238.215 kb on + strand, within GFF4596 at 238.320 kb on + strand, within GFF4596 at 238.335 kb on + strand, within GFF4596 at 238.335 kb on + strand, within GFF4596 at 238.336 kb on - strand, within GFF4596 at 238.336 kb on - strand, within GFF4596 at 238.336 kb on - strand, within GFF4596 at 238.436 kb on - strand, within GFF4596 at 238.458 kb on + strand, within GFF4596 at 238.458 kb on + strand, within GFF4596 at 238.458 kb on + strand, within GFF4596 at 238.458 kb on + strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.459 kb on - strand, within GFF4596 at 238.588 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.614 kb on + strand at 238.615 kb on - strand at 238.615 kb on - strand at 238.615 kb on - strand at 238.615 kb on - strand at 238.615 kb on - strand at 238.941 kb on + strand, within GFF4597 at 238.942 kb on - strand, within GFF4597 at 238.942 kb on - strand, within GFF4597 at 239.037 kb on + strand, within GFF4597 at 239.038 kb on - strand, within GFF4597 at 239.160 kb on + strand, within GFF4597 at 239.161 kb on - strand, within GFF4597 at 239.161 kb on - strand, within GFF4597 at 239.161 kb on - strand, within GFF4597 at 239.628 kb on + strand at 239.628 kb on + strand at 239.628 kb on + strand at 239.628 kb on + strand at 239.628 kb on + strand at 239.628 kb on + strand at 239.628 kb on + strand at 239.629 kb on - strand at 239.629 kb on - strand at 239.629 kb on - strand at 239.640 kb on + strand at 239.640 kb on + strand at 239.640 kb on + strand at 239.641 kb on - strand at 239.641 kb on - strand at 239.641 kb on - strand at 239.641 kb on - strand at 239.757 kb on + strand at 239.758 kb on - strand at 240.111 kb on + strand, within GFF4598 at 240.213 kb on + strand, within GFF4598 at 240.214 kb on - strand, within GFF4598 at 240.214 kb on - strand, within GFF4598 at 240.214 kb on - strand, within GFF4598 at 240.339 kb on + strand, within GFF4598 at 240.339 kb on + strand, within GFF4598 at 240.339 kb on + strand, within GFF4598 at 240.339 kb on + strand, within GFF4598 at 240.349 kb on - strand, within GFF4598 at 240.636 kb on + strand, within GFF4598 at 240.636 kb on + strand, within GFF4598 at 240.637 kb on - strand, within GFF4598 at 240.637 kb on - strand, within GFF4598 at 240.637 kb on - strand, within GFF4598
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 238,215 + GFF4596 0.69 -0.2 238,320 + GFF4596 0.76 +2.0 238,335 + GFF4596 0.77 -0.5 238,335 + GFF4596 0.77 +0.2 238,336 - GFF4596 0.77 -1.2 238,336 - GFF4596 0.77 -0.1 238,336 - GFF4596 0.77 -2.7 238,436 - GFF4596 0.84 +0.1 238,458 + GFF4596 0.86 -1.3 238,458 + GFF4596 0.86 -3.3 238,458 + GFF4596 0.86 -2.0 238,458 + GFF4596 0.86 -1.1 238,459 - GFF4596 0.86 -0.7 238,459 - GFF4596 0.86 +0.5 238,459 - GFF4596 0.86 -0.1 238,459 - GFF4596 0.86 -2.0 238,459 - GFF4596 0.86 -2.0 238,459 - GFF4596 0.86 +0.2 238,459 - GFF4596 0.86 -2.1 238,588 + -3.3 238,614 + -2.9 238,614 + -1.2 238,614 + +0.1 238,614 + -0.2 238,614 + +1.3 238,614 + -1.1 238,614 + -2.1 238,614 + -0.1 238,614 + -2.9 238,615 - -0.2 238,615 - -1.2 238,615 - -2.0 238,615 - -0.9 238,615 - +0.2 238,941 + GFF4597 0.18 -1.7 238,942 - GFF4597 0.18 +0.4 238,942 - GFF4597 0.18 +0.2 239,037 + GFF4597 0.28 -2.9 239,038 - GFF4597 0.28 -0.7 239,160 + GFF4597 0.41 +0.3 239,161 - GFF4597 0.41 -0.6 239,161 - GFF4597 0.41 -1.5 239,161 - GFF4597 0.41 +1.3 239,628 + -0.4 239,628 + +2.1 239,628 + +2.3 239,628 + -2.1 239,628 + +0.7 239,628 + +0.2 239,628 + -0.4 239,629 - +0.6 239,629 - -1.5 239,629 - -1.2 239,640 + +0.1 239,640 + -1.1 239,640 + -1.0 239,641 - -1.2 239,641 - +1.4 239,641 - +1.1 239,641 - +0.1 239,757 + +1.4 239,758 - +0.5 240,111 + GFF4598 0.19 +0.0 240,213 + GFF4598 0.25 -0.1 240,214 - GFF4598 0.25 +2.5 240,214 - GFF4598 0.25 +1.0 240,214 - GFF4598 0.25 -0.0 240,339 + GFF4598 0.32 +1.7 240,339 + GFF4598 0.32 -0.8 240,339 + GFF4598 0.32 -0.1 240,339 + GFF4598 0.32 -1.7 240,349 - GFF4598 0.32 -1.7 240,636 + GFF4598 0.48 +0.5 240,636 + GFF4598 0.48 -0.5 240,637 - GFF4598 0.48 -0.7 240,637 - GFF4598 0.48 -2.1 240,637 - GFF4598 0.48 +0.7
Or see this region's nucleotide sequence