Strain Fitness in Variovorax sp. SCN45 around GFF4495

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
138,672	-				-0.7
138,672	-				+1.1
138,810	+		GFF4494	0.21	-1.4
138,810	+		GFF4494	0.21	-2.4
138,810	+		GFF4494	0.21	+0.4
138,810	+		GFF4494	0.21	+0.1
138,810	+		GFF4494	0.21	-1.7
138,810	+		GFF4494	0.21	-1.0
138,810	+		GFF4494	0.21	-1.2
138,810	+		GFF4494	0.21	+0.0
138,810	+		GFF4494	0.21	-1.7
138,810	+		GFF4494	0.21	-0.4
138,811	-		GFF4494	0.22	+0.9
138,811	-		GFF4494	0.22	+0.4
138,811	-		GFF4494	0.22	+1.6
138,811	-		GFF4494	0.22	-0.2
138,966	+		GFF4494	0.71	-0.5
138,966	+		GFF4494	0.71	-0.7
138,966	+		GFF4494	0.71	+0.8
138,966	+		GFF4494	0.71	-1.6
138,967	-		GFF4494	0.71	-2.0
138,967	-		GFF4494	0.71	+1.1
138,967	-		GFF4494	0.71	-1.6
138,967	-		GFF4494	0.71	-0.9
139,151	+				-2.5
139,151	+				-0.4
139,151	+				-0.3
139,152	-				-0.5
139,152	-				+0.5
139,403	+		GFF4495	0.40	+0.5
139,403	+		GFF4495	0.40	+0.8
139,404	-		GFF4495	0.40	-0.9
139,404	-		GFF4495	0.40	+1.0
139,583	+		GFF4495	0.62	+2.2
139,583	+		GFF4495	0.62	+0.9
139,584	-		GFF4495	0.62	-0.9
139,584	-		GFF4495	0.62	-0.2
139,584	-		GFF4495	0.62	-0.2
139,584	-		GFF4495	0.62	-1.6
139,685	+		GFF4495	0.75	-0.8
139,685	+		GFF4495	0.75	+0.1
139,685	+		GFF4495	0.75	+1.1
139,685	+		GFF4495	0.75	-1.8
139,685	+		GFF4495	0.75	-1.4
139,686	-		GFF4495	0.75	+0.4
139,686	-		GFF4495	0.75	+0.1
139,686	-		GFF4495	0.75	-0.9
139,691	+		GFF4495	0.75	-0.7
139,691	+		GFF4495	0.75	+0.4
139,691	+		GFF4495	0.75	-0.2
139,691	+		GFF4495	0.75	+3.9
139,691	+		GFF4495	0.75	-0.5
139,692	-		GFF4495	0.75	-0.9
139,692	-		GFF4495	0.75	-0.3
139,853	+				+3.8
139,853	+				+1.1
139,853	+				-0.4
139,853	+				-1.1
139,853	+				-1.6
139,853	+				-2.0
139,854	-				-1.6
139,854	-				+3.0
139,854	-				+0.5
139,854	-				-2.0
139,854	-				-2.2
139,854	-				-0.3
139,856	+				+0.3
139,856	+				-0.7
139,856	+				+0.2
139,856	+				+1.3
139,856	+				-1.1
139,857	-				-1.4
139,857	-				+2.2
139,857	-				-1.4
139,857	-				-0.6
140,130	+		GFF4496	0.12	+0.9
140,130	+		GFF4496	0.12	-0.8
140,212	-		GFF4496	0.17	-0.8
140,457	+		GFF4496	0.33	-0.7
140,457	+		GFF4496	0.33	-0.8
140,458	-		GFF4496	0.33	-0.3
140,458	-		GFF4496	0.33	-1.5
140,458	-		GFF4496	0.33	+0.8
140,507	+		GFF4496	0.36	+1.7
140,508	-		GFF4496	0.36	+0.8
140,508	-		GFF4496	0.36	+1.4
140,508	-		GFF4496	0.36	-0.4
140,733	+		GFF4496	0.50	-0.2
140,863	-		GFF4496	0.58	-0.6
140,863	-		GFF4496	0.58	+0.9