Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF443 and GFF444 are separated by 54 nucleotides GFF444 and GFF445 are separated by 22 nucleotides GFF445 and GFF446 overlap by 4 nucleotides
GFF443 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 482,016 to 482,705
GFF443
GFF444 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis, at 482,760 to 483,329
GFF444
GFF445 - Ferrichrome transport ATP-binding protein FhuC, at 483,352 to 484,128
GFF445
GFF446 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 484,125 to 485,150
GFF446
Position (kb) 483
484
485 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 482.662 kb on + strand at 482.790 kb on - strand at 482.790 kb on - strand at 482.790 kb on - strand at 482.835 kb on - strand, within GFF444 at 482.946 kb on + strand, within GFF444 at 482.947 kb on + strand, within GFF444 at 482.947 kb on + strand, within GFF444 at 482.947 kb on + strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.959 kb on + strand, within GFF444 at 482.960 kb on - strand, within GFF444 at 482.960 kb on - strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.170 kb on - strand, within GFF444 at 483.170 kb on - strand, within GFF444 at 483.295 kb on + strand at 483.296 kb on - strand at 483.296 kb on - strand at 483.312 kb on - strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.353 kb on + strand at 483.830 kb on + strand, within GFF445 at 483.830 kb on + strand, within GFF445 at 483.830 kb on + strand, within GFF445 at 483.830 kb on + strand, within GFF445 at 483.830 kb on + strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 483.831 kb on - strand, within GFF445 at 484.174 kb on + strand at 484.174 kb on + strand at 484.175 kb on - strand at 484.175 kb on - strand at 484.175 kb on - strand at 484.175 kb on - strand at 484.175 kb on - strand at 484.175 kb on - strand at 484.416 kb on + strand, within GFF446 at 484.417 kb on - strand, within GFF446 at 484.417 kb on - strand, within GFF446 at 484.599 kb on + strand, within GFF446 at 484.599 kb on + strand, within GFF446 at 484.599 kb on + strand, within GFF446 at 484.599 kb on + strand, within GFF446 at 484.600 kb on - strand, within GFF446 at 484.600 kb on - strand, within GFF446 at 484.874 kb on - strand, within GFF446 at 484.874 kb on - strand, within GFF446
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 482,662 + +0.8 482,790 - +0.3 482,790 - -1.2 482,790 - -2.0 482,835 - GFF444 0.13 +0.0 482,946 + GFF444 0.33 -2.4 482,947 + GFF444 0.33 -2.1 482,947 + GFF444 0.33 -0.6 482,947 + GFF444 0.33 -1.4 482,948 - GFF444 0.33 -1.3 482,948 - GFF444 0.33 -2.1 482,948 - GFF444 0.33 +1.3 482,948 - GFF444 0.33 -2.6 482,959 + GFF444 0.35 -1.4 482,960 - GFF444 0.35 -1.1 482,960 - GFF444 0.35 -0.6 483,169 + GFF444 0.72 -1.7 483,169 + GFF444 0.72 -0.1 483,169 + GFF444 0.72 +0.7 483,169 + GFF444 0.72 -0.6 483,170 - GFF444 0.72 +0.2 483,170 - GFF444 0.72 +0.2 483,295 + -2.6 483,296 - -1.0 483,296 - -1.4 483,312 - -0.6 483,344 + -0.4 483,344 + -2.0 483,344 + +1.1 483,344 + +1.3 483,344 + -1.6 483,344 + +1.6 483,344 + -0.2 483,344 + +0.4 483,344 + -2.2 483,345 - +1.1 483,345 - +0.2 483,345 - -1.2 483,345 - +1.0 483,345 - -1.4 483,345 - -0.7 483,345 - -1.0 483,345 - -1.0 483,345 - -0.5 483,345 - -1.3 483,345 - +1.0 483,345 - -1.2 483,345 - +0.4 483,345 - +0.0 483,353 + +1.0 483,830 + GFF445 0.62 -0.7 483,830 + GFF445 0.62 -3.2 483,830 + GFF445 0.62 -3.3 483,830 + GFF445 0.62 -0.3 483,830 + GFF445 0.62 -1.3 483,831 - GFF445 0.62 -1.2 483,831 - GFF445 0.62 +1.6 483,831 - GFF445 0.62 -3.0 483,831 - GFF445 0.62 -2.0 483,831 - GFF445 0.62 -0.7 483,831 - GFF445 0.62 -2.7 483,831 - GFF445 0.62 +1.0 484,174 + -1.9 484,174 + -3.0 484,175 - -1.1 484,175 - -1.2 484,175 - +1.1 484,175 - +0.0 484,175 - -3.0 484,175 - -0.4 484,416 + GFF446 0.28 +1.8 484,417 - GFF446 0.28 -3.2 484,417 - GFF446 0.28 -1.0 484,599 + GFF446 0.46 -1.2 484,599 + GFF446 0.46 -1.0 484,599 + GFF446 0.46 -1.1 484,599 + GFF446 0.46 -2.9 484,600 - GFF446 0.46 -2.2 484,600 - GFF446 0.46 -1.8 484,874 - GFF446 0.73 -2.6 484,874 - GFF446 0.73 -3.9
Or see this region's nucleotide sequence