Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4281 and GFF4282 are separated by 158 nucleotides GFF4282 and GFF4283 are separated by 541 nucleotides GFF4283 and GFF4284 are separated by 102 nucleotides
GFF4281 - Transcriptional regulator, IclR family, at 200,975 to 201,742
GFF4281
GFF4282 - BUG/TctC family periplasmic protein, at 201,901 to 202,902
GFF4282
GFF4283 - Putative transposase InsK for insertion sequence element IS150, at 203,444 to 203,617
GFF4283
GFF4284 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 203,720 to 205,303
GFF4284
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 201.114 kb on - strand, within GFF4281 at 201.114 kb on - strand, within GFF4281 at 201.125 kb on + strand, within GFF4281 at 201.380 kb on + strand, within GFF4281 at 201.624 kb on + strand, within GFF4281 at 201.625 kb on - strand, within GFF4281 at 202.068 kb on - strand, within GFF4282 at 202.276 kb on + strand, within GFF4282 at 202.473 kb on + strand, within GFF4282 at 202.474 kb on - strand, within GFF4282 at 202.480 kb on + strand, within GFF4282 at 202.511 kb on + strand, within GFF4282 at 202.900 kb on + strand at 202.901 kb on - strand at 203.331 kb on + strand at 203.331 kb on + strand at 203.331 kb on + strand at 203.408 kb on - strand at 203.426 kb on + strand at 203.523 kb on + strand, within GFF4283 at 203.524 kb on - strand, within GFF4283 at 203.536 kb on - strand, within GFF4283 at 203.536 kb on - strand, within GFF4283 at 203.592 kb on + strand, within GFF4283 at 203.593 kb on - strand, within GFF4283
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 201,114 - GFF4281 0.18 -0.9 201,114 - GFF4281 0.18 -0.9 201,125 + GFF4281 0.20 +0.4 201,380 + GFF4281 0.53 +0.5 201,624 + GFF4281 0.85 +0.9 201,625 - GFF4281 0.85 -2.1 202,068 - GFF4282 0.17 -1.8 202,276 + GFF4282 0.37 -0.9 202,473 + GFF4282 0.57 +3.7 202,474 - GFF4282 0.57 -0.2 202,480 + GFF4282 0.58 -0.1 202,511 + GFF4282 0.61 -1.5 202,900 + -0.1 202,901 - +0.3 203,331 + -1.3 203,331 + -0.4 203,331 + -0.8 203,408 - -0.4 203,426 + -1.7 203,523 + GFF4283 0.45 -2.3 203,524 - GFF4283 0.46 -0.3 203,536 - GFF4283 0.53 -0.6 203,536 - GFF4283 0.53 +0.9 203,592 + GFF4283 0.85 +0.7 203,593 - GFF4283 0.86 +0.1
Or see this region's nucleotide sequence