Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4100 and GFF4101 are separated by 37 nucleotides GFF4101 and GFF4102 overlap by 4 nucleotides
GFF4100 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 234 to 1,835
GFF4100
GFF4101 - N-methylhydantoinase B (EC 3.5.2.14), at 1,873 to 3,609
GFF4101
GFF4102 - N-methylhydantoinase B (EC 3.5.2.14), at 3,606 to 5,306
GFF4102
Position (kb) 1
2
3
4 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 0.889 kb on + strand, within GFF4100 at 0.890 kb on - strand, within GFF4100 at 0.890 kb on - strand, within GFF4100 at 1.009 kb on + strand, within GFF4100 at 1.195 kb on + strand, within GFF4100 at 1.196 kb on - strand, within GFF4100 at 1.213 kb on + strand, within GFF4100 at 1.312 kb on + strand, within GFF4100 at 1.313 kb on - strand, within GFF4100 at 1.402 kb on + strand, within GFF4100 at 1.402 kb on + strand, within GFF4100 at 1.403 kb on - strand, within GFF4100 at 1.403 kb on - strand, within GFF4100 at 1.556 kb on - strand, within GFF4100 at 1.618 kb on + strand, within GFF4100 at 1.619 kb on - strand, within GFF4100 at 2.714 kb on + strand, within GFF4101 at 2.715 kb on - strand, within GFF4101 at 2.715 kb on - strand, within GFF4101 at 3.024 kb on - strand, within GFF4101 at 3.055 kb on + strand, within GFF4101 at 3.144 kb on - strand, within GFF4101 at 4.428 kb on - strand, within GFF4102
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 889 + GFF4100 0.41 -0.6 890 - GFF4100 0.41 +0.5 890 - GFF4100 0.41 -3.0 1,009 + GFF4100 0.48 -2.8 1,195 + GFF4100 0.60 -1.8 1,196 - GFF4100 0.60 +0.8 1,213 + GFF4100 0.61 -0.9 1,312 + GFF4100 0.67 -0.1 1,313 - GFF4100 0.67 +0.9 1,402 + GFF4100 0.73 -1.5 1,402 + GFF4100 0.73 +0.6 1,403 - GFF4100 0.73 -3.4 1,403 - GFF4100 0.73 +0.1 1,556 - GFF4100 0.83 +0.9 1,618 + GFF4100 0.86 +0.4 1,619 - GFF4100 0.86 +0.5 2,714 + GFF4101 0.48 +0.8 2,715 - GFF4101 0.48 -0.9 2,715 - GFF4101 0.48 -0.1 3,024 - GFF4101 0.66 -0.2 3,055 + GFF4101 0.68 -1.0 3,144 - GFF4101 0.73 -0.7 4,428 - GFF4102 0.48 +1.1
Or see this region's nucleotide sequence