Strain Fitness in Variovorax sp. SCN45 around GFF3822

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
9,333	+		GFF3821	0.69	+0.5
9,333	+		GFF3821	0.69	+0.1
9,334	-		GFF3821	0.69	-0.9
9,334	-		GFF3821	0.69	-0.2
9,726	+		GFF3821	0.81	+0.8
9,726	+		GFF3821	0.81	-2.6
9,726	+		GFF3821	0.81	-1.6
9,727	-		GFF3821	0.82	-0.2
9,727	-		GFF3821	0.82	-0.1
9,769	-		GFF3821	0.83	+1.1
9,769	-		GFF3821	0.83	+0.4
9,843	+		GFF3821	0.85	-1.0
9,843	+		GFF3821	0.85	-1.3
9,843	+		GFF3821	0.85	-0.4
9,843	+		GFF3821	0.85	-0.1
9,844	-		GFF3821	0.85	-0.9
9,844	-		GFF3821	0.85	-2.2
9,844	-		GFF3821	0.85	-0.1
9,844	-		GFF3821	0.85	-0.8
9,844	-		GFF3821	0.85	-2.1
9,844	-		GFF3821	0.85	-0.4
9,844	-		GFF3821	0.85	-0.4
9,885	+		GFF3821	0.87	-0.9
9,885	+		GFF3821	0.87	-0.3
9,885	+		GFF3821	0.87	-1.6
9,886	-		GFF3821	0.87	+0.3
9,886	-		GFF3821	0.87	-0.9
9,886	-		GFF3821	0.87	-0.7
9,971	-		GFF3821	0.89	+1.9
9,971	-		GFF3821	0.89	-3.0
9,971	-		GFF3821	0.89	-2.7
9,971	-		GFF3821	0.89	-0.8
9,971	-		GFF3821	0.89	+0.9
9,971	-		GFF3821	0.89	-1.4
10,083	+				-2.1
10,083	+				+1.4
10,083	+				+1.0
10,083	+				-1.4
10,083	+				+0.3
10,083	+				+0.2
10,083	+				-0.9
10,084	-				+2.1
10,084	-				+0.8
10,084	-				+0.3
10,084	-				-2.4
10,084	-				+0.2
10,084	-				+0.9
10,084	-				+1.2
10,084	-				+0.1
10,084	-				-1.6
10,084	-				+0.1
10,167	+				+0.6
10,167	+				+1.0
10,209	+				-0.9
10,210	-				-0.6
10,296	-				+2.0
10,430	+				+1.6
10,430	+				-2.1
10,431	-				-1.3
10,431	-				+1.9
10,431	-				-2.3
10,431	-				-0.1
10,431	-				-1.2
10,674	+		GFF3822	0.28	+0.9
10,674	+		GFF3822	0.28	-1.7
10,674	+		GFF3822	0.28	-2.0
10,674	+		GFF3822	0.28	-1.6
10,674	+		GFF3822	0.28	-1.7
10,674	+		GFF3822	0.28	+1.0
10,674	+		GFF3822	0.28	+0.8
10,675	-		GFF3822	0.28	-0.0
10,675	-		GFF3822	0.28	+1.9
10,675	-		GFF3822	0.28	-2.6
10,675	-		GFF3822	0.28	+0.1
10,675	-		GFF3822	0.28	-0.8
10,675	-		GFF3822	0.28	-0.3
10,788	+		GFF3822	0.37	-1.6
10,788	+		GFF3822	0.37	+0.1
10,788	+		GFF3822	0.37	+0.9
10,788	+		GFF3822	0.37	+0.1
10,789	-		GFF3822	0.38	+1.4
10,817	+		GFF3822	0.40	-0.8
10,817	+		GFF3822	0.40	-0.7
10,817	+		GFF3822	0.40	-2.7
10,817	+		GFF3822	0.40	+0.7
10,817	+		GFF3822	0.40	-0.7
10,817	+		GFF3822	0.40	-2.2
10,818	-		GFF3822	0.40	-1.9
10,818	-		GFF3822	0.40	+1.3
10,818	-		GFF3822	0.40	-0.1
11,035	-		GFF3822	0.57	+1.7
11,035	-		GFF3822	0.57	+0.1
11,271	+		GFF3822	0.76	+1.5
11,271	+		GFF3822	0.76	+1.4
11,272	-		GFF3822	0.76	+0.3
11,581	-				+0.5
11,584	+				-0.1
11,584	+				-1.6
11,585	-				-2.3
11,666	-				-1.5
12,043	-		GFF3823	0.19	-0.4
12,043	-		GFF3823	0.19	-1.9
12,043	-		GFF3823	0.19	-2.5
12,051	+		GFF3823	0.19	-0.8
12,051	+		GFF3823	0.19	+1.0
12,051	+		GFF3823	0.19	+0.0
12,051	+		GFF3823	0.19	+2.1
12,052	-		GFF3823	0.20	-0.8
12,396	+		GFF3823	0.43	-1.6
12,396	+		GFF3823	0.43	-1.0
12,396	+		GFF3823	0.43	-3.6
12,397	-		GFF3823	0.43	+0.3
12,397	-		GFF3823	0.43	-0.1
12,397	-		GFF3823	0.43	-0.6
12,397	-		GFF3823	0.43	-0.7
12,483	+		GFF3823	0.49	-1.8
12,483	+		GFF3823	0.49	+0.3
12,483	+		GFF3823	0.49	-2.3
12,483	+		GFF3823	0.49	+0.7
12,483	+		GFF3823	0.49	-1.0
12,483	+		GFF3823	0.49	+0.5
12,484	-		GFF3823	0.49	-1.7
12,484	-		GFF3823	0.49	-0.7
12,484	-		GFF3823	0.49	-2.1
12,492	+		GFF3823	0.49	+0.4
12,492	+		GFF3823	0.49	+0.9
12,492	+		GFF3823	0.49	+2.6
12,493	-		GFF3823	0.50	-0.3
12,493	-		GFF3823	0.50	-1.1
12,507	+		GFF3823	0.50	-0.5
12,508	-		GFF3823	0.51	-0.3
12,508	-		GFF3823	0.51	-1.9
12,508	-		GFF3823	0.51	+0.8
12,534	+		GFF3823	0.52	+1.7
12,535	-		GFF3823	0.52	-0.6
12,535	-		GFF3823	0.52	+0.6
12,535	-		GFF3823	0.52	+0.2
12,546	+		GFF3823	0.53	-2.2
12,546	+		GFF3823	0.53	-1.0
12,546	+		GFF3823	0.53	-0.1
12,546	+		GFF3823	0.53	-1.1
12,546	+		GFF3823	0.53	-1.6
12,547	-		GFF3823	0.53	-1.1
12,547	-		GFF3823	0.53	-1.1
12,547	-		GFF3823	0.53	-1.6
12,547	-		GFF3823	0.53	-0.6
12,547	-		GFF3823	0.53	+0.3
12,547	-		GFF3823	0.53	-0.8
12,547	-		GFF3823	0.53	+0.9