Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3771 and GFF3772 overlap by 4 nucleotides GFF3772 and GFF3773 are separated by 10 nucleotides GFF3773 and GFF3774 overlap by 4 nucleotides
GFF3771 - no description, at 262,941 to 263,495
GFF3771
GFF3772 - Arginase (EC 3.5.3.1), at 263,492 to 264,412
GFF3772
GFF3773 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 264,423 to 265,403
GFF3773
GFF3774 - hypothetical protein, at 265,400 to 266,797
GFF3774
Position (kb) 264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 263.445 kb on + strand at 263.445 kb on + strand at 263.446 kb on - strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.454 kb on + strand at 263.455 kb on - strand at 263.455 kb on - strand at 263.455 kb on - strand at 263.455 kb on - strand at 263.493 kb on + strand at 263.655 kb on + strand, within GFF3772 at 263.656 kb on - strand, within GFF3772 at 264.380 kb on + strand at 264.658 kb on + strand, within GFF3773 at 264.658 kb on + strand, within GFF3773 at 264.658 kb on + strand, within GFF3773 at 264.659 kb on - strand, within GFF3773 at 264.836 kb on - strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.985 kb on + strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.986 kb on - strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.993 kb on + strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 264.994 kb on - strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.258 kb on + strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.259 kb on - strand, within GFF3773 at 265.331 kb on - strand at 265.457 kb on - strand at 265.578 kb on + strand, within GFF3774 at 265.579 kb on - strand, within GFF3774 at 265.797 kb on + strand, within GFF3774 at 266.354 kb on + strand, within GFF3774 at 266.355 kb on - strand, within GFF3774 at 266.355 kb on - strand, within GFF3774
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 263,445 + -0.8 263,445 + -0.3 263,446 - +0.3 263,454 + -0.3 263,454 + -1.6 263,454 + +2.2 263,454 + -0.3 263,454 + -2.8 263,454 + +1.5 263,454 + -2.1 263,455 - -0.3 263,455 - -0.0 263,455 - -0.1 263,455 - -1.3 263,493 + +0.3 263,655 + GFF3772 0.18 +0.2 263,656 - GFF3772 0.18 -1.5 264,380 + +0.1 264,658 + GFF3773 0.24 -0.3 264,658 + GFF3773 0.24 -0.1 264,658 + GFF3773 0.24 +0.1 264,659 - GFF3773 0.24 -0.2 264,836 - GFF3773 0.42 -0.2 264,985 + GFF3773 0.57 +2.2 264,985 + GFF3773 0.57 -1.4 264,985 + GFF3773 0.57 +3.5 264,985 + GFF3773 0.57 -0.1 264,986 - GFF3773 0.57 +0.6 264,986 - GFF3773 0.57 +2.8 264,986 - GFF3773 0.57 -3.3 264,993 + GFF3773 0.58 +1.6 264,993 + GFF3773 0.58 -1.3 264,993 + GFF3773 0.58 -0.3 264,994 - GFF3773 0.58 -2.1 264,994 - GFF3773 0.58 +0.3 264,994 - GFF3773 0.58 -1.3 264,994 - GFF3773 0.58 -0.8 264,994 - GFF3773 0.58 +2.2 265,258 + GFF3773 0.85 -1.9 265,258 + GFF3773 0.85 -2.5 265,258 + GFF3773 0.85 +0.6 265,258 + GFF3773 0.85 -0.4 265,258 + GFF3773 0.85 -0.8 265,258 + GFF3773 0.85 +0.3 265,259 - GFF3773 0.85 -3.5 265,259 - GFF3773 0.85 -0.4 265,259 - GFF3773 0.85 -1.5 265,259 - GFF3773 0.85 +2.2 265,331 - -0.5 265,457 - -0.7 265,578 + GFF3774 0.13 -1.7 265,579 - GFF3774 0.13 -0.0 265,797 + GFF3774 0.28 +2.0 266,354 + GFF3774 0.68 -1.9 266,355 - GFF3774 0.68 -0.5 266,355 - GFF3774 0.68 -0.7
Or see this region's nucleotide sequence