Strain Fitness in Variovorax sp. SCN45 around GFF3744

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3743 and GFF3744 are separated by 51 nucleotidesGFF3744 and GFF3745 are separated by 25 nucleotidesGFF3745 and GFF3746 are separated by 10 nucleotides GFF3743 - Twitching motility protein PilT, at 239,251 to 240,294 GFF3743 GFF3744 - Pyridoxal phosphate-containing protein YggS, at 240,346 to 241,047 GFF3744 GFF3745 - Uncharacterized UPF0721 integral membrane protein, at 241,073 to 241,813 GFF3745 GFF3746 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 241,824 to 242,414 GFF3746 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.387 kb on + strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.388 kb on - strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.607 kb on + strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.608 kb on - strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.671 kb on + strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.672 kb on - strand, within GFF3743at 239.840 kb on + strand, within GFF3743at 239.841 kb on - strand, within GFF3743at 239.841 kb on - strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.858 kb on + strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 239.859 kb on - strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.107 kb on + strand, within GFF3743at 240.108 kb on - strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.140 kb on + strand, within GFF3743at 240.141 kb on - strand, within GFF3743at 240.346 kb on - strandat 240.346 kb on - strandat 240.377 kb on + strandat 240.377 kb on + strandat 240.377 kb on + strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 240.378 kb on - strandat 241.173 kb on + strand, within GFF3745at 241.173 kb on + strand, within GFF3745at 241.174 kb on - strand, within GFF3745at 241.242 kb on + strand, within GFF3745at 241.242 kb on + strand, within GFF3745at 241.243 kb on - strand, within GFF3745at 241.243 kb on - strand, within GFF3745at 241.372 kb on - strand, within GFF3745at 241.380 kb on + strand, within GFF3745at 241.380 kb on + strand, within GFF3745at 241.380 kb on + strand, within GFF3745at 241.650 kb on + strand, within GFF3745at 241.650 kb on + strand, within GFF3745at 241.651 kb on - strand, within GFF3745at 241.651 kb on - strand, within GFF3745at 241.651 kb on - strand, within GFF3745at 242.024 kb on - strand, within GFF3746

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
239,387 + GFF3743 0.13 -1.0
239,387 + GFF3743 0.13 -0.6
239,387 + GFF3743 0.13 -0.4
239,387 + GFF3743 0.13 +0.3
239,387 + GFF3743 0.13 +0.6
239,387 + GFF3743 0.13 -1.7
239,387 + GFF3743 0.13 -2.0
239,387 + GFF3743 0.13 -1.7
239,387 + GFF3743 0.13 -2.0
239,387 + GFF3743 0.13 -0.5
239,387 + GFF3743 0.13 -2.5
239,388 - GFF3743 0.13 +0.3
239,388 - GFF3743 0.13 -0.4
239,388 - GFF3743 0.13 -1.5
239,388 - GFF3743 0.13 -2.7
239,388 - GFF3743 0.13 -0.8
239,388 - GFF3743 0.13 +1.9
239,388 - GFF3743 0.13 +0.1
239,388 - GFF3743 0.13 +0.2
239,388 - GFF3743 0.13 +0.2
239,388 - GFF3743 0.13 -1.9
239,388 - GFF3743 0.13 -1.9
239,607 + GFF3743 0.34 -0.3
239,607 + GFF3743 0.34 +0.6
239,607 + GFF3743 0.34 -0.1
239,607 + GFF3743 0.34 -0.1
239,607 + GFF3743 0.34 -2.3
239,607 + GFF3743 0.34 -0.6
239,607 + GFF3743 0.34 -0.5
239,608 - GFF3743 0.34 -2.2
239,608 - GFF3743 0.34 +0.6
239,608 - GFF3743 0.34 -2.4
239,671 + GFF3743 0.40 -0.1
239,671 + GFF3743 0.40 -0.8
239,671 + GFF3743 0.40 -2.5
239,671 + GFF3743 0.40 -1.6
239,672 - GFF3743 0.40 -1.6
239,672 - GFF3743 0.40 +1.6
239,672 - GFF3743 0.40 -0.0
239,672 - GFF3743 0.40 -2.9
239,672 - GFF3743 0.40 -1.0
239,672 - GFF3743 0.40 -1.2
239,840 + GFF3743 0.56 +2.4
239,841 - GFF3743 0.57 -0.7
239,841 - GFF3743 0.57 -2.0
239,858 + GFF3743 0.58 -1.3
239,858 + GFF3743 0.58 +1.3
239,858 + GFF3743 0.58 -0.6
239,858 + GFF3743 0.58 -1.6
239,858 + GFF3743 0.58 -0.4
239,858 + GFF3743 0.58 +0.7
239,858 + GFF3743 0.58 -3.0
239,858 + GFF3743 0.58 -1.6
239,858 + GFF3743 0.58 -3.0
239,859 - GFF3743 0.58 -1.9
239,859 - GFF3743 0.58 -1.6
239,859 - GFF3743 0.58 -1.2
239,859 - GFF3743 0.58 +0.2
239,859 - GFF3743 0.58 -1.3
239,859 - GFF3743 0.58 -2.3
239,859 - GFF3743 0.58 -0.6
239,859 - GFF3743 0.58 +0.3
239,859 - GFF3743 0.58 -2.6
239,859 - GFF3743 0.58 +0.6
239,859 - GFF3743 0.58 -1.9
240,107 + GFF3743 0.82 +0.1
240,107 + GFF3743 0.82 -0.4
240,107 + GFF3743 0.82 +1.0
240,107 + GFF3743 0.82 -1.0
240,107 + GFF3743 0.82 -1.4
240,107 + GFF3743 0.82 -2.1
240,108 - GFF3743 0.82 -0.8
240,140 + GFF3743 0.85 +1.7
240,140 + GFF3743 0.85 -1.3
240,140 + GFF3743 0.85 -0.8
240,140 + GFF3743 0.85 -1.0
240,140 + GFF3743 0.85 +0.2
240,141 - GFF3743 0.85 +0.2
240,346 - -0.3
240,346 - +0.2
240,377 + +0.4
240,377 + -2.1
240,377 + +0.7
240,378 - -0.4
240,378 - -2.0
240,378 - +0.0
240,378 - -0.3
240,378 - +1.1
240,378 - -2.3
240,378 - +1.9
241,173 + GFF3745 0.13 +0.3
241,173 + GFF3745 0.13 -0.1
241,174 - GFF3745 0.14 +0.5
241,242 + GFF3745 0.23 +0.5
241,242 + GFF3745 0.23 -1.4
241,243 - GFF3745 0.23 +1.5
241,243 - GFF3745 0.23 +0.9
241,372 - GFF3745 0.40 -1.3
241,380 + GFF3745 0.41 -2.3
241,380 + GFF3745 0.41 +0.6
241,380 + GFF3745 0.41 +1.1
241,650 + GFF3745 0.78 -0.1
241,650 + GFF3745 0.78 -1.2
241,651 - GFF3745 0.78 +2.5
241,651 - GFF3745 0.78 -1.5
241,651 - GFF3745 0.78 -3.3
242,024 - GFF3746 0.34 +0.2

Or see this region's nucleotide sequence