Strain Fitness in Variovorax sp. SCN45 around GFF3571

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3569 and GFF3570 are separated by 89 nucleotidesGFF3570 and GFF3571 are separated by 222 nucleotidesGFF3571 and GFF3572 overlap by 11 nucleotidesGFF3572 and GFF3573 are separated by 3 nucleotides GFF3569 - Organic hydroperoxide resistance protein, at 81,804 to 82,229 GFF3569 GFF3570 - Organic hydroperoxide resistance transcriptional regulator, at 82,319 to 82,774 GFF3570 GFF3571 - hypothetical protein, at 82,997 to 84,529 GFF3571 GFF3572 - Efflux ABC transporter, permease protein, at 84,519 to 85,346 GFF3572 GFF3573 - Efflux ABC transporter, ATP-binding protein, at 85,350 to 86,294 GFF3573 Position (kb) 82 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 82.201 kb on + strandat 82.201 kb on + strandat 82.201 kb on + strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.515 kb on + strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.644 kb on + strand, within GFF3570at 82.644 kb on + strand, within GFF3570at 82.645 kb on - strand, within GFF3570at 82.645 kb on - strand, within GFF3570at 82.645 kb on - strand, within GFF3570at 82.677 kb on + strand, within GFF3570at 82.677 kb on + strand, within GFF3570at 82.677 kb on + strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.787 kb on - strandat 82.824 kb on + strandat 82.824 kb on + strandat 82.825 kb on - strandat 82.842 kb on - strandat 82.842 kb on - strandat 82.842 kb on - strandat 82.842 kb on - strandat 82.900 kb on + strandat 82.900 kb on + strandat 82.901 kb on - strandat 83.034 kb on - strandat 83.096 kb on + strandat 83.096 kb on + strandat 83.096 kb on + strandat 83.096 kb on + strandat 83.097 kb on - strandat 83.097 kb on - strandat 83.097 kb on - strandat 83.097 kb on - strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.102 kb on + strandat 83.174 kb on + strand, within GFF3571at 83.174 kb on + strand, within GFF3571at 83.175 kb on - strand, within GFF3571at 83.175 kb on - strand, within GFF3571at 83.210 kb on + strand, within GFF3571at 83.210 kb on + strand, within GFF3571at 83.291 kb on + strand, within GFF3571at 83.291 kb on + strand, within GFF3571at 83.291 kb on + strand, within GFF3571at 83.291 kb on + strand, within GFF3571at 83.291 kb on + strand, within GFF3571at 83.292 kb on - strand, within GFF3571at 83.292 kb on - strand, within GFF3571at 83.292 kb on - strand, within GFF3571at 83.315 kb on + strand, within GFF3571at 83.315 kb on + strand, within GFF3571at 83.315 kb on + strand, within GFF3571at 83.315 kb on + strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.316 kb on - strand, within GFF3571at 83.355 kb on - strand, within GFF3571at 83.456 kb on + strand, within GFF3571at 83.456 kb on + strand, within GFF3571at 83.456 kb on + strand, within GFF3571at 83.456 kb on + strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.457 kb on - strand, within GFF3571at 83.624 kb on + strand, within GFF3571at 83.624 kb on + strand, within GFF3571at 83.624 kb on + strand, within GFF3571at 84.080 kb on + strand, within GFF3571at 84.080 kb on + strand, within GFF3571at 84.080 kb on + strand, within GFF3571at 84.081 kb on - strand, within GFF3571at 84.081 kb on - strand, within GFF3571at 84.577 kb on + strandat 84.577 kb on + strandat 84.578 kb on - strandat 84.766 kb on + strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.769 kb on + strand, within GFF3572at 84.769 kb on + strand, within GFF3572at 84.770 kb on - strand, within GFF3572at 84.770 kb on - strand, within GFF3572at 84.784 kb on + strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.352 kb on - strandat 85.480 kb on + strand, within GFF3573at 85.481 kb on - strand, within GFF3573

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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82,201 + -2.4
82,201 + -1.6
82,201 + -1.1
82,202 - -3.3
82,202 - -1.4
82,202 - +0.3
82,202 - +0.7
82,202 - -1.3
82,202 - +0.6
82,202 - -2.1
82,202 - -0.3
82,202 - -0.9
82,515 + GFF3570 0.43 +0.2
82,516 - GFF3570 0.43 -1.2
82,516 - GFF3570 0.43 +0.9
82,516 - GFF3570 0.43 -0.1
82,516 - GFF3570 0.43 -1.8
82,516 - GFF3570 0.43 +0.5
82,635 + GFF3570 0.69 -1.1
82,635 + GFF3570 0.69 -0.5
82,635 + GFF3570 0.69 +1.2
82,636 - GFF3570 0.70 -1.1
82,636 - GFF3570 0.70 +0.0
82,636 - GFF3570 0.70 -2.3
82,636 - GFF3570 0.70 -0.7
82,644 + GFF3570 0.71 -2.5
82,644 + GFF3570 0.71 -0.4
82,645 - GFF3570 0.71 +0.2
82,645 - GFF3570 0.71 +0.6
82,645 - GFF3570 0.71 -1.5
82,677 + GFF3570 0.79 -1.5
82,677 + GFF3570 0.79 -0.9
82,677 + GFF3570 0.79 -2.4
82,678 - GFF3570 0.79 -1.4
82,678 - GFF3570 0.79 -0.9
82,678 - GFF3570 0.79 -1.9
82,678 - GFF3570 0.79 +0.3
82,678 - GFF3570 0.79 -0.4
82,707 + GFF3570 0.85 -0.0
82,707 + GFF3570 0.85 +0.8
82,707 + GFF3570 0.85 -2.5
82,707 + GFF3570 0.85 -1.0
82,707 + GFF3570 0.85 +0.2
82,708 - GFF3570 0.85 -2.4
82,708 - GFF3570 0.85 -1.6
82,708 - GFF3570 0.85 -0.6
82,708 - GFF3570 0.85 -0.4
82,787 - +0.6
82,824 + -1.2
82,824 + -0.6
82,825 - -0.8
82,842 - -0.6
82,842 - -2.8
82,842 - +0.4
82,842 - -0.5
82,900 + +0.2
82,900 + -2.9
82,901 - -1.4
83,034 - -0.3
83,096 + +0.2
83,096 + +0.1
83,096 + +1.5
83,096 + -2.0
83,097 - +1.2
83,097 - -0.8
83,097 - +2.6
83,097 - -1.4
83,099 + +0.1
83,099 + -1.3
83,099 + -0.8
83,099 + +1.8
83,099 + +0.2
83,099 + -0.4
83,099 + +0.2
83,099 + -0.3
83,100 - +1.3
83,100 - -1.3
83,100 - +1.2
83,100 - +1.2
83,100 - +0.8
83,100 - -1.6
83,100 - +0.3
83,100 - -0.6
83,102 + -1.0
83,174 + GFF3571 0.12 -0.5
83,174 + GFF3571 0.12 -2.6
83,175 - GFF3571 0.12 +0.7
83,175 - GFF3571 0.12 -0.1
83,210 + GFF3571 0.14 +1.6
83,210 + GFF3571 0.14 -2.3
83,291 + GFF3571 0.19 -3.3
83,291 + GFF3571 0.19 -0.6
83,291 + GFF3571 0.19 -0.4
83,291 + GFF3571 0.19 -0.3
83,291 + GFF3571 0.19 -2.1
83,292 - GFF3571 0.19 -1.0
83,292 - GFF3571 0.19 +1.7
83,292 - GFF3571 0.19 +1.0
83,315 + GFF3571 0.21 -0.4
83,315 + GFF3571 0.21 -1.6
83,315 + GFF3571 0.21 -1.1
83,315 + GFF3571 0.21 +1.6
83,316 - GFF3571 0.21 -1.5
83,316 - GFF3571 0.21 -2.4
83,316 - GFF3571 0.21 +1.1
83,316 - GFF3571 0.21 -0.8
83,316 - GFF3571 0.21 +0.5
83,316 - GFF3571 0.21 +0.2
83,316 - GFF3571 0.21 -0.7
83,316 - GFF3571 0.21 -1.8
83,355 - GFF3571 0.23 -0.3
83,456 + GFF3571 0.30 +0.1
83,456 + GFF3571 0.30 -0.9
83,456 + GFF3571 0.30 +0.2
83,456 + GFF3571 0.30 -1.1
83,457 - GFF3571 0.30 +0.2
83,457 - GFF3571 0.30 -1.4
83,457 - GFF3571 0.30 -0.8
83,457 - GFF3571 0.30 -0.8
83,457 - GFF3571 0.30 -1.3
83,457 - GFF3571 0.30 -1.1
83,457 - GFF3571 0.30 -2.5
83,624 + GFF3571 0.41 +0.3
83,624 + GFF3571 0.41 -0.1
83,624 + GFF3571 0.41 +0.9
84,080 + GFF3571 0.71 -1.2
84,080 + GFF3571 0.71 -0.7
84,080 + GFF3571 0.71 -0.3
84,081 - GFF3571 0.71 -1.1
84,081 - GFF3571 0.71 +0.7
84,577 + +1.0
84,577 + +0.4
84,578 - +0.3
84,766 + GFF3572 0.30 -1.9
84,767 - GFF3572 0.30 +0.4
84,767 - GFF3572 0.30 -1.7
84,767 - GFF3572 0.30 +1.0
84,767 - GFF3572 0.30 +0.6
84,767 - GFF3572 0.30 -0.4
84,767 - GFF3572 0.30 +1.4
84,767 - GFF3572 0.30 -0.6
84,767 - GFF3572 0.30 +0.0
84,767 - GFF3572 0.30 -0.4
84,767 - GFF3572 0.30 +0.6
84,769 + GFF3572 0.30 -1.6
84,769 + GFF3572 0.30 -0.6
84,770 - GFF3572 0.30 -2.7
84,770 - GFF3572 0.30 +1.1
84,784 + GFF3572 0.32 +2.8
84,785 - GFF3572 0.32 -1.0
84,785 - GFF3572 0.32 +0.6
84,785 - GFF3572 0.32 +0.4
84,785 - GFF3572 0.32 +1.4
85,046 - GFF3572 0.64 -1.1
85,046 - GFF3572 0.64 -1.3
85,046 - GFF3572 0.64 -1.4
85,046 - GFF3572 0.64 +1.0
85,046 - GFF3572 0.64 +1.2
85,046 - GFF3572 0.64 +0.1
85,046 - GFF3572 0.64 -0.6
85,114 + GFF3572 0.72 +1.1
85,114 + GFF3572 0.72 -0.2
85,114 + GFF3572 0.72 +1.4
85,114 + GFF3572 0.72 +0.5
85,114 + GFF3572 0.72 -2.0
85,114 + GFF3572 0.72 -0.0
85,115 - GFF3572 0.72 +1.9
85,115 - GFF3572 0.72 +0.3
85,115 - GFF3572 0.72 -1.6
85,115 - GFF3572 0.72 -0.2
85,115 - GFF3572 0.72 -0.1
85,115 - GFF3572 0.72 +1.2
85,115 - GFF3572 0.72 -1.5
85,115 - GFF3572 0.72 +0.3
85,115 - GFF3572 0.72 -0.1
85,115 - GFF3572 0.72 -2.0
85,115 - GFF3572 0.72 -0.3
85,115 - GFF3572 0.72 +0.4
85,115 - GFF3572 0.72 -0.3
85,352 - -3.2
85,480 + GFF3573 0.14 -2.8
85,481 - GFF3573 0.14 -1.0

Or see this region's nucleotide sequence