Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3371 and GFF3372 overlap by 4 nucleotides GFF3372 and GFF3373 are separated by 66 nucleotides
GFF3371 - FIG00456413: hypothetical protein, at 191,037 to 192,425
GFF3371
GFF3372 - hypothetical protein, at 192,422 to 192,874
GFF3372
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
Position (kb) 192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.566 kb on + strand, within GFF3371 at 191.567 kb on - strand, within GFF3371 at 191.567 kb on - strand, within GFF3371 at 191.716 kb on + strand, within GFF3371 at 191.851 kb on + strand, within GFF3371 at 191.875 kb on + strand, within GFF3371 at 191.875 kb on + strand, within GFF3371 at 191.876 kb on - strand, within GFF3371 at 191.876 kb on - strand, within GFF3371 at 192.462 kb on + strand at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.694 kb on - strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.828 kb on - strand, within GFF3372 at 192.942 kb on + strand at 192.942 kb on + strand at 192.943 kb on - strand at 192.943 kb on - strand at 192.943 kb on - strand at 193.329 kb on + strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.477 kb on - strand, within GFF3373 at 193.858 kb on - strand, within GFF3373
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 191,512 + GFF3371 0.34 +0.3 191,512 + GFF3371 0.34 -0.5 191,512 + GFF3371 0.34 -1.5 191,512 + GFF3371 0.34 +0.2 191,512 + GFF3371 0.34 -1.3 191,512 + GFF3371 0.34 +2.6 191,512 + GFF3371 0.34 -1.0 191,512 + GFF3371 0.34 -2.1 191,512 + GFF3371 0.34 -2.0 191,512 + GFF3371 0.34 +0.9 191,513 - GFF3371 0.34 +1.2 191,513 - GFF3371 0.34 -3.5 191,513 - GFF3371 0.34 +1.1 191,513 - GFF3371 0.34 -1.0 191,566 + GFF3371 0.38 +0.2 191,567 - GFF3371 0.38 +1.7 191,567 - GFF3371 0.38 +0.0 191,716 + GFF3371 0.49 -0.5 191,851 + GFF3371 0.59 -0.4 191,875 + GFF3371 0.60 -1.1 191,875 + GFF3371 0.60 -1.0 191,876 - GFF3371 0.60 +1.3 191,876 - GFF3371 0.60 -1.5 192,462 + +0.6 192,480 + GFF3372 0.13 -0.6 192,480 + GFF3372 0.13 -0.0 192,480 + GFF3372 0.13 +0.8 192,480 + GFF3372 0.13 -1.4 192,481 - GFF3372 0.13 +1.5 192,481 - GFF3372 0.13 -1.4 192,481 - GFF3372 0.13 +2.6 192,481 - GFF3372 0.13 +1.6 192,693 + GFF3372 0.60 +0.0 192,693 + GFF3372 0.60 +0.5 192,694 - GFF3372 0.60 +3.5 192,827 + GFF3372 0.89 +0.8 192,827 + GFF3372 0.89 -0.6 192,827 + GFF3372 0.89 +0.3 192,828 - GFF3372 0.90 -0.7 192,942 + +0.4 192,942 + -0.5 192,943 - -1.2 192,943 - -0.6 192,943 - +0.4 193,329 + GFF3373 0.30 -1.7 193,330 - GFF3373 0.30 +0.3 193,330 - GFF3373 0.30 +2.1 193,350 + GFF3373 0.32 +1.3 193,350 + GFF3373 0.32 +1.0 193,476 + GFF3373 0.41 +2.0 193,476 + GFF3373 0.41 -0.4 193,477 - GFF3373 0.42 -2.1 193,858 - GFF3373 0.71 +0.0
Or see this region's nucleotide sequence