Strain Fitness in Variovorax sp. SCN45 around GFF3227

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
47,369	-		GFF3225	0.77	+1.3
47,635	+		GFF3225	0.89	+0.3
47,636	-		GFF3225	0.89	+0.3
47,636	-		GFF3225	0.89	-0.3
47,665	+				-0.5
47,710	+				-0.2
47,710	+				+0.8
47,710	+				-0.8
47,826	+				+0.8
47,826	+				+1.2
47,891	+				-2.2
47,892	-				-0.1
48,192	+		GFF3226	0.62	-0.3
48,192	+		GFF3226	0.62	-1.1
48,193	-		GFF3226	0.62	+2.3
48,381	+		GFF3227	0.11	-1.8
48,381	+		GFF3227	0.11	-2.4
48,387	+		GFF3227	0.12	-0.9
48,388	-		GFF3227	0.13	-1.0
49,154	+		GFF3228	0.45	-1.0
49,280	+		GFF3228	0.58	+1.1
49,469	+		GFF3228	0.79	-1.7
49,505	+		GFF3228	0.83	-3.0
49,506	-		GFF3228	0.83	+0.5
49,506	-		GFF3228	0.83	-2.1