Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3154 and GFF3155 are separated by 77 nucleotides GFF3155 and GFF3156 are separated by 13 nucleotides
GFF3154 - no description, at 589,946 to 591,103
GFF3154
GFF3155 - Gluconolactonase (EC 3.1.1.17), at 591,181 to 592,110
GFF3155
GFF3156 - FIG00441737: hypothetical protein, at 592,124 to 593,281
GFF3156
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.432 kb on + strand, within GFF3154 at 590.433 kb on - strand, within GFF3154 at 590.433 kb on - strand, within GFF3154 at 590.648 kb on + strand, within GFF3154 at 590.648 kb on + strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.714 kb on + strand, within GFF3154 at 591.373 kb on + strand, within GFF3155 at 591.373 kb on + strand, within GFF3155 at 591.373 kb on + strand, within GFF3155 at 591.374 kb on - strand, within GFF3155 at 591.452 kb on - strand, within GFF3155 at 591.452 kb on - strand, within GFF3155 at 591.508 kb on + strand, within GFF3155 at 591.509 kb on - strand, within GFF3155 at 591.577 kb on + strand, within GFF3155 at 591.578 kb on - strand, within GFF3155 at 591.634 kb on + strand, within GFF3155 at 591.634 kb on + strand, within GFF3155 at 591.728 kb on - strand, within GFF3155 at 592.027 kb on + strand at 592.028 kb on - strand at 592.177 kb on - strand at 592.467 kb on + strand, within GFF3156 at 592.467 kb on + strand, within GFF3156 at 592.467 kb on + strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.615 kb on - strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.894 kb on - strand, within GFF3156
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 590,432 + GFF3154 0.42 -2.2 590,433 - GFF3154 0.42 -2.1 590,433 - GFF3154 0.42 +0.9 590,648 + GFF3154 0.61 -0.7 590,648 + GFF3154 0.61 -0.0 590,649 - GFF3154 0.61 -0.7 590,649 - GFF3154 0.61 +0.3 590,649 - GFF3154 0.61 +0.8 590,649 - GFF3154 0.61 +0.7 590,714 + GFF3154 0.66 +2.1 591,373 + GFF3155 0.21 -1.9 591,373 + GFF3155 0.21 -1.0 591,373 + GFF3155 0.21 -0.4 591,374 - GFF3155 0.21 +0.1 591,452 - GFF3155 0.29 +0.8 591,452 - GFF3155 0.29 -0.3 591,508 + GFF3155 0.35 -2.0 591,509 - GFF3155 0.35 +0.0 591,577 + GFF3155 0.43 -0.2 591,578 - GFF3155 0.43 -3.6 591,634 + GFF3155 0.49 -0.7 591,634 + GFF3155 0.49 -1.7 591,728 - GFF3155 0.59 -0.0 592,027 + -2.4 592,028 - -0.4 592,177 - -0.8 592,467 + GFF3156 0.30 -2.5 592,467 + GFF3156 0.30 -1.2 592,467 + GFF3156 0.30 +0.6 592,468 - GFF3156 0.30 +0.8 592,468 - GFF3156 0.30 -0.5 592,468 - GFF3156 0.30 -0.7 592,615 - GFF3156 0.42 +0.6 592,674 + GFF3156 0.47 -2.0 592,674 + GFF3156 0.47 +0.3 592,674 + GFF3156 0.47 +0.3 592,674 + GFF3156 0.47 +0.3 592,675 - GFF3156 0.48 -1.2 592,675 - GFF3156 0.48 +1.0 592,675 - GFF3156 0.48 -1.1 592,894 - GFF3156 0.66 +1.4
Or see this region's nucleotide sequence