Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3141 and GFF3142 are separated by 9 nucleotides GFF3142 and GFF3143 are separated by 128 nucleotides
GFF3141 - Phosphate acetyltransferase (EC 2.3.1.8), at 572,244 to 573,197
GFF3141
GFF3142 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 573,207 to 576,818
GFF3142
GFF3143 - hypothetical protein, at 576,947 to 577,816
GFF3143
Position (kb) 573
574
575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.212 kb on - strand at 572.277 kb on + strand at 572.277 kb on + strand at 572.278 kb on - strand at 573.704 kb on - strand, within GFF3142 at 573.733 kb on + strand, within GFF3142 at 573.734 kb on - strand, within GFF3142 at 573.734 kb on - strand, within GFF3142 at 574.111 kb on + strand, within GFF3142 at 574.228 kb on - strand, within GFF3142 at 574.588 kb on + strand, within GFF3142 at 574.589 kb on - strand, within GFF3142 at 574.589 kb on - strand, within GFF3142 at 574.589 kb on - strand, within GFF3142 at 574.741 kb on + strand, within GFF3142 at 574.742 kb on - strand, within GFF3142 at 574.945 kb on + strand, within GFF3142 at 574.945 kb on + strand, within GFF3142 at 574.946 kb on - strand, within GFF3142 at 574.946 kb on - strand, within GFF3142 at 575.056 kb on + strand, within GFF3142 at 575.198 kb on - strand, within GFF3142 at 575.198 kb on - strand, within GFF3142 at 575.198 kb on - strand, within GFF3142 at 575.254 kb on + strand, within GFF3142 at 575.254 kb on + strand, within GFF3142 at 575.255 kb on - strand, within GFF3142 at 575.255 kb on - strand, within GFF3142 at 575.257 kb on + strand, within GFF3142 at 575.257 kb on + strand, within GFF3142 at 575.257 kb on + strand, within GFF3142 at 575.258 kb on - strand, within GFF3142 at 575.258 kb on - strand, within GFF3142 at 575.258 kb on - strand, within GFF3142 at 575.467 kb on + strand, within GFF3142 at 575.468 kb on - strand, within GFF3142 at 575.704 kb on + strand, within GFF3142 at 575.793 kb on - strand, within GFF3142 at 575.830 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.232 kb on + strand, within GFF3142 at 576.233 kb on - strand, within GFF3142 at 576.256 kb on + strand, within GFF3142 at 576.256 kb on + strand, within GFF3142 at 576.454 kb on + strand, within GFF3142 at 576.913 kb on + strand at 576.914 kb on - strand at 577.021 kb on - strand at 577.038 kb on + strand, within GFF3143 at 577.101 kb on + strand, within GFF3143 at 577.102 kb on - strand, within GFF3143 at 577.102 kb on - strand, within GFF3143 at 577.147 kb on - strand, within GFF3143 at 577.218 kb on + strand, within GFF3143 at 577.219 kb on - strand, within GFF3143 at 577.263 kb on + strand, within GFF3143 at 577.263 kb on + strand, within GFF3143 at 577.264 kb on - strand, within GFF3143 at 577.324 kb on - strand, within GFF3143 at 577.324 kb on - strand, within GFF3143 at 577.443 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.519 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.602 kb on + strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.603 kb on - strand, within GFF3143 at 577.691 kb on + strand, within GFF3143 at 577.691 kb on + strand, within GFF3143
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 572,212 - -0.2 572,277 + +0.1 572,277 + +0.2 572,278 - -0.4 573,704 - GFF3142 0.14 +0.9 573,733 + GFF3142 0.15 +2.0 573,734 - GFF3142 0.15 +0.5 573,734 - GFF3142 0.15 -0.2 574,111 + GFF3142 0.25 +2.6 574,228 - GFF3142 0.28 +0.3 574,588 + GFF3142 0.38 -0.5 574,589 - GFF3142 0.38 -1.0 574,589 - GFF3142 0.38 +0.0 574,589 - GFF3142 0.38 -0.5 574,741 + GFF3142 0.42 -1.6 574,742 - GFF3142 0.42 +0.1 574,945 + GFF3142 0.48 -0.7 574,945 + GFF3142 0.48 +0.4 574,946 - GFF3142 0.48 -0.1 574,946 - GFF3142 0.48 -0.3 575,056 + GFF3142 0.51 -1.0 575,198 - GFF3142 0.55 +0.3 575,198 - GFF3142 0.55 +0.3 575,198 - GFF3142 0.55 -1.3 575,254 + GFF3142 0.57 -0.4 575,254 + GFF3142 0.57 -0.8 575,255 - GFF3142 0.57 -0.5 575,255 - GFF3142 0.57 -2.3 575,257 + GFF3142 0.57 +0.2 575,257 + GFF3142 0.57 -2.0 575,257 + GFF3142 0.57 -2.4 575,258 - GFF3142 0.57 -2.3 575,258 - GFF3142 0.57 +1.7 575,258 - GFF3142 0.57 +0.7 575,467 + GFF3142 0.63 +0.6 575,468 - GFF3142 0.63 -0.2 575,704 + GFF3142 0.69 -0.3 575,793 - GFF3142 0.72 +0.7 575,830 + GFF3142 0.73 -1.2 576,232 + GFF3142 0.84 -1.3 576,232 + GFF3142 0.84 +1.3 576,232 + GFF3142 0.84 +0.7 576,232 + GFF3142 0.84 -2.9 576,233 - GFF3142 0.84 -1.3 576,256 + GFF3142 0.84 -3.7 576,256 + GFF3142 0.84 -2.9 576,454 + GFF3142 0.90 -0.5 576,913 + +0.5 576,914 - +0.1 577,021 - +1.8 577,038 + GFF3143 0.10 +2.3 577,101 + GFF3143 0.18 +1.2 577,102 - GFF3143 0.18 -1.7 577,102 - GFF3143 0.18 -0.6 577,147 - GFF3143 0.23 -2.4 577,218 + GFF3143 0.31 -1.4 577,219 - GFF3143 0.31 -2.0 577,263 + GFF3143 0.36 -0.6 577,263 + GFF3143 0.36 -0.4 577,264 - GFF3143 0.36 -0.7 577,324 - GFF3143 0.43 -1.1 577,324 - GFF3143 0.43 +0.0 577,443 + GFF3143 0.57 -2.0 577,519 + GFF3143 0.66 -2.2 577,519 + GFF3143 0.66 -3.3 577,519 + GFF3143 0.66 +0.3 577,602 + GFF3143 0.75 -0.5 577,602 + GFF3143 0.75 -0.7 577,602 + GFF3143 0.75 -0.6 577,602 + GFF3143 0.75 -1.5 577,603 - GFF3143 0.75 -1.1 577,603 - GFF3143 0.75 -2.2 577,603 - GFF3143 0.75 -0.3 577,603 - GFF3143 0.75 -0.8 577,603 - GFF3143 0.75 -0.6 577,603 - GFF3143 0.75 -1.5 577,603 - GFF3143 0.75 -1.5 577,691 + GFF3143 0.86 -0.6 577,691 + GFF3143 0.86 +0.5
Or see this region's nucleotide sequence