Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3116 and GFF3117 are separated by 5 nucleotides GFF3117 and GFF3118 overlap by 14 nucleotides GFF3118 and GFF3119 are separated by 26 nucleotides
GFF3116 - Peptide chain release factor 2 @ programmed frameshift-containing, at 542,902 to 543,804
GFF3116
GFF3117 - Beta-phosphoglucomutase (EC 5.4.2.6), at 543,810 to 544,508
GFF3117
GFF3118 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 544,495 to 547,188
GFF3118
GFF3119 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 547,215 to 548,225
GFF3119
Position (kb) 544
545
546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 543.802 kb on + strand at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.068 kb on + strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.069 kb on - strand, within GFF3117 at 544.102 kb on + strand, within GFF3117 at 544.103 kb on - strand, within GFF3117 at 544.455 kb on + strand at 544.546 kb on + strand at 544.547 kb on - strand at 544.562 kb on - strand at 544.897 kb on + strand, within GFF3118 at 544.898 kb on - strand, within GFF3118 at 544.930 kb on + strand, within GFF3118 at 544.930 kb on + strand, within GFF3118 at 545.062 kb on + strand, within GFF3118 at 545.062 kb on + strand, within GFF3118 at 545.063 kb on - strand, within GFF3118 at 545.149 kb on + strand, within GFF3118 at 545.149 kb on + strand, within GFF3118 at 545.150 kb on - strand, within GFF3118 at 545.150 kb on - strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.332 kb on + strand, within GFF3118 at 545.333 kb on - strand, within GFF3118 at 545.333 kb on - strand, within GFF3118 at 545.333 kb on - strand, within GFF3118 at 545.371 kb on + strand, within GFF3118 at 545.404 kb on + strand, within GFF3118 at 545.404 kb on + strand, within GFF3118 at 545.404 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.626 kb on + strand, within GFF3118 at 545.627 kb on - strand, within GFF3118 at 545.627 kb on - strand, within GFF3118 at 545.627 kb on - strand, within GFF3118 at 545.647 kb on + strand, within GFF3118 at 545.647 kb on + strand, within GFF3118 at 545.647 kb on + strand, within GFF3118 at 545.662 kb on + strand, within GFF3118 at 545.662 kb on + strand, within GFF3118 at 545.855 kb on - strand, within GFF3118 at 545.855 kb on - strand, within GFF3118 at 545.896 kb on + strand, within GFF3118 at 545.897 kb on - strand, within GFF3118 at 545.917 kb on + strand, within GFF3118 at 545.917 kb on + strand, within GFF3118 at 545.917 kb on + strand, within GFF3118 at 545.917 kb on + strand, within GFF3118 at 545.918 kb on - strand, within GFF3118 at 546.143 kb on + strand, within GFF3118 at 546.144 kb on - strand, within GFF3118 at 546.184 kb on + strand, within GFF3118 at 546.331 kb on + strand, within GFF3118 at 546.331 kb on + strand, within GFF3118 at 546.332 kb on - strand, within GFF3118 at 546.332 kb on - strand, within GFF3118 at 546.332 kb on - strand, within GFF3118 at 546.418 kb on + strand, within GFF3118 at 546.418 kb on + strand, within GFF3118 at 546.419 kb on - strand, within GFF3118 at 546.553 kb on + strand, within GFF3118 at 546.934 kb on + strand at 546.934 kb on + strand at 546.934 kb on + strand at 546.982 kb on + strand at 546.982 kb on + strand at 546.982 kb on + strand at 546.982 kb on + strand at 546.982 kb on + strand at 546.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 543,802 + -1.6 544,068 + GFF3117 0.37 -1.0 544,068 + GFF3117 0.37 -0.7 544,068 + GFF3117 0.37 -0.2 544,068 + GFF3117 0.37 +0.2 544,068 + GFF3117 0.37 -2.1 544,068 + GFF3117 0.37 +2.1 544,069 - GFF3117 0.37 +0.3 544,069 - GFF3117 0.37 +1.1 544,069 - GFF3117 0.37 -0.2 544,069 - GFF3117 0.37 +0.9 544,069 - GFF3117 0.37 -1.5 544,102 + GFF3117 0.42 -0.5 544,103 - GFF3117 0.42 +0.4 544,455 + -2.1 544,546 + -0.3 544,547 - +0.8 544,562 - +0.3 544,897 + GFF3118 0.15 +0.3 544,898 - GFF3118 0.15 +0.8 544,930 + GFF3118 0.16 +1.6 544,930 + GFF3118 0.16 +0.9 545,062 + GFF3118 0.21 -0.9 545,062 + GFF3118 0.21 -1.3 545,063 - GFF3118 0.21 +1.8 545,149 + GFF3118 0.24 +0.1 545,149 + GFF3118 0.24 -0.9 545,150 - GFF3118 0.24 -1.0 545,150 - GFF3118 0.24 -0.4 545,332 + GFF3118 0.31 -0.8 545,332 + GFF3118 0.31 -3.0 545,332 + GFF3118 0.31 -2.1 545,332 + GFF3118 0.31 -0.2 545,332 + GFF3118 0.31 +0.3 545,333 - GFF3118 0.31 +1.8 545,333 - GFF3118 0.31 +0.3 545,333 - GFF3118 0.31 +0.8 545,371 + GFF3118 0.33 -2.3 545,404 + GFF3118 0.34 -0.4 545,404 + GFF3118 0.34 -0.5 545,404 + GFF3118 0.34 -1.0 545,626 + GFF3118 0.42 -0.9 545,626 + GFF3118 0.42 -0.6 545,626 + GFF3118 0.42 -1.6 545,626 + GFF3118 0.42 -1.2 545,626 + GFF3118 0.42 -1.1 545,626 + GFF3118 0.42 -3.0 545,626 + GFF3118 0.42 -1.3 545,626 + GFF3118 0.42 -0.6 545,627 - GFF3118 0.42 -0.5 545,627 - GFF3118 0.42 +0.8 545,627 - GFF3118 0.42 -0.7 545,647 + GFF3118 0.43 +0.3 545,647 + GFF3118 0.43 -2.1 545,647 + GFF3118 0.43 +1.0 545,662 + GFF3118 0.43 -0.9 545,662 + GFF3118 0.43 -0.5 545,855 - GFF3118 0.50 +0.6 545,855 - GFF3118 0.50 -1.0 545,896 + GFF3118 0.52 +0.8 545,897 - GFF3118 0.52 -2.6 545,917 + GFF3118 0.53 +1.8 545,917 + GFF3118 0.53 -0.7 545,917 + GFF3118 0.53 +0.8 545,917 + GFF3118 0.53 -1.9 545,918 - GFF3118 0.53 +0.3 546,143 + GFF3118 0.61 -1.0 546,144 - GFF3118 0.61 +1.0 546,184 + GFF3118 0.63 +3.8 546,331 + GFF3118 0.68 -2.1 546,331 + GFF3118 0.68 -2.1 546,332 - GFF3118 0.68 +0.1 546,332 - GFF3118 0.68 -2.0 546,332 - GFF3118 0.68 +1.8 546,418 + GFF3118 0.71 -0.5 546,418 + GFF3118 0.71 +0.3 546,419 - GFF3118 0.71 -0.5 546,553 + GFF3118 0.76 +0.6 546,934 + -3.3 546,934 + -2.2 546,934 + -2.2 546,982 + -0.2 546,982 + -2.6 546,982 + -0.7 546,982 + -0.4 546,982 + -1.0 546,983 - +0.3
Or see this region's nucleotide sequence