Strain Fitness in Variovorax sp. SCN45 around GFF3082

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3079 and GFF3080 are separated by 78 nucleotidesGFF3080 and GFF3081 are separated by 33 nucleotidesGFF3081 and GFF3082 are separated by 127 nucleotidesGFF3082 and GFF3084 are separated by 43 nucleotidesGFF3084 and GFF3083 overlap by 2 nucleotidesGFF3083 and GFF3085 are separated by 110 nucleotides GFF3079 - hypothetical protein, at 513,352 to 513,627 GFF3079 GFF3080 - no description, at 513,706 to 513,840 GFF3080 GFF3081 - no description, at 513,874 to 513,993 GFF3081 GFF3082 - hypothetical protein, at 514,121 to 514,561 GFF3082 GFF3084 - no description, at 514,605 to 514,880 GFF3084 GFF3083 - no description, at 514,879 to 515,016 GFF3083 GFF3085 - no description, at 515,127 to 515,399 GFF3085 Position (kb) 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 513.121 kb on - strandat 513.121 kb on - strandat 513.121 kb on - strandat 513.121 kb on - strandat 513.176 kb on - strandat 513.313 kb on - strandat 513.317 kb on + strandat 513.318 kb on - strandat 513.318 kb on - strandat 513.326 kb on - strandat 513.505 kb on + strand, within GFF3079at 513.505 kb on + strand, within GFF3079at 513.505 kb on + strand, within GFF3079at 513.506 kb on - strand, within GFF3079at 513.506 kb on - strand, within GFF3079at 513.506 kb on - strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.580 kb on + strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.581 kb on - strand, within GFF3079at 513.586 kb on + strand, within GFF3079at 513.587 kb on - strand, within GFF3079at 513.625 kb on + strandat 513.625 kb on + strandat 513.625 kb on + strandat 513.626 kb on - strandat 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.742 kb on + strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.743 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.761 kb on - strand, within GFF3080at 513.939 kb on + strand, within GFF3081at 513.939 kb on + strand, within GFF3081at 513.939 kb on + strand, within GFF3081at 513.940 kb on - strand, within GFF3081at 513.940 kb on - strand, within GFF3081at 514.070 kb on + strandat 514.070 kb on + strandat 514.070 kb on + strandat 514.145 kb on + strandat 514.145 kb on + strandat 514.146 kb on - strandat 514.230 kb on + strand, within GFF3082at 514.230 kb on + strand, within GFF3082at 514.230 kb on + strand, within GFF3082at 514.230 kb on + strand, within GFF3082at 514.266 kb on + strand, within GFF3082at 514.267 kb on - strand, within GFF3082at 514.267 kb on - strand, within GFF3082at 514.267 kb on - strand, within GFF3082at 514.267 kb on - strand, within GFF3082at 514.537 kb on + strandat 514.538 kb on - strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.561 kb on + strandat 514.576 kb on + strandat 514.576 kb on + strandat 514.576 kb on + strandat 514.576 kb on + strandat 514.577 kb on - strandat 514.577 kb on - strandat 514.585 kb on + strandat 514.585 kb on + strandat 514.585 kb on + strandat 514.585 kb on + strandat 514.585 kb on + strandat 514.586 kb on - strandat 514.586 kb on - strandat 514.586 kb on - strandat 514.606 kb on + strandat 514.780 kb on + strand, within GFF3084at 514.780 kb on + strand, within GFF3084at 514.780 kb on + strand, within GFF3084at 514.780 kb on + strand, within GFF3084at 514.780 kb on + strand, within GFF3084at 514.780 kb on + strand, within GFF3084at 514.781 kb on - strand, within GFF3084at 514.781 kb on - strand, within GFF3084at 514.781 kb on - strand, within GFF3084at 514.781 kb on - strand, within GFF3084at 514.781 kb on - strand, within GFF3084at 514.781 kb on - strand, within GFF3084at 515.098 kb on + strandat 515.098 kb on + strandat 515.272 kb on + strand, within GFF3085at 515.272 kb on + strand, within GFF3085at 515.272 kb on + strand, within GFF3085at 515.465 kb on + strandat 515.465 kb on + strandat 515.466 kb on - strandat 515.466 kb on - strandat 515.466 kb on - strandat 515.479 kb on + strandat 515.480 kb on - strandat 515.491 kb on + strandat 515.491 kb on + strandat 515.492 kb on - strandat 515.492 kb on - strandat 515.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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513,121 - +0.2
513,121 - -2.7
513,121 - -0.7
513,121 - +1.4
513,176 - -2.1
513,313 - -2.0
513,317 + +0.3
513,318 - -0.4
513,318 - +0.0
513,326 - -3.0
513,505 + GFF3079 0.55 +0.8
513,505 + GFF3079 0.55 -1.2
513,505 + GFF3079 0.55 -1.7
513,506 - GFF3079 0.56 -0.1
513,506 - GFF3079 0.56 +0.3
513,506 - GFF3079 0.56 -1.0
513,580 + GFF3079 0.83 -1.3
513,580 + GFF3079 0.83 -2.2
513,580 + GFF3079 0.83 -0.3
513,580 + GFF3079 0.83 -2.2
513,580 + GFF3079 0.83 -1.1
513,580 + GFF3079 0.83 -0.7
513,580 + GFF3079 0.83 +0.3
513,581 - GFF3079 0.83 -0.2
513,581 - GFF3079 0.83 -1.0
513,581 - GFF3079 0.83 +1.2
513,581 - GFF3079 0.83 -0.5
513,586 + GFF3079 0.85 -0.4
513,587 - GFF3079 0.85 +0.5
513,625 + +0.2
513,625 + -1.7
513,625 + +0.3
513,626 - -1.3
513,742 + GFF3080 0.27 -1.7
513,742 + GFF3080 0.27 -1.1
513,742 + GFF3080 0.27 -0.5
513,742 + GFF3080 0.27 -0.9
513,742 + GFF3080 0.27 +1.5
513,742 + GFF3080 0.27 +1.1
513,742 + GFF3080 0.27 -1.6
513,742 + GFF3080 0.27 +0.4
513,742 + GFF3080 0.27 +0.4
513,742 + GFF3080 0.27 +0.8
513,742 + GFF3080 0.27 -1.7
513,742 + GFF3080 0.27 +0.7
513,742 + GFF3080 0.27 +0.9
513,742 + GFF3080 0.27 -0.3
513,742 + GFF3080 0.27 +2.2
513,742 + GFF3080 0.27 -1.2
513,742 + GFF3080 0.27 -0.3
513,742 + GFF3080 0.27 -1.0
513,742 + GFF3080 0.27 +1.8
513,742 + GFF3080 0.27 -0.8
513,742 + GFF3080 0.27 +1.3
513,742 + GFF3080 0.27 -0.3
513,743 - GFF3080 0.27 +1.0
513,743 - GFF3080 0.27 -2.0
513,743 - GFF3080 0.27 +0.7
513,743 - GFF3080 0.27 -0.3
513,743 - GFF3080 0.27 +2.6
513,743 - GFF3080 0.27 -3.2
513,743 - GFF3080 0.27 -1.2
513,743 - GFF3080 0.27 +0.3
513,743 - GFF3080 0.27 +0.4
513,743 - GFF3080 0.27 -1.8
513,743 - GFF3080 0.27 -2.7
513,743 - GFF3080 0.27 -1.5
513,743 - GFF3080 0.27 -2.7
513,743 - GFF3080 0.27 -0.5
513,743 - GFF3080 0.27 -0.2
513,743 - GFF3080 0.27 -1.0
513,743 - GFF3080 0.27 -0.1
513,743 - GFF3080 0.27 -0.8
513,743 - GFF3080 0.27 -0.9
513,743 - GFF3080 0.27 +1.2
513,743 - GFF3080 0.27 -1.2
513,761 - GFF3080 0.41 -2.5
513,761 - GFF3080 0.41 +0.5
513,761 - GFF3080 0.41 -0.4
513,761 - GFF3080 0.41 -2.3
513,939 + GFF3081 0.54 -0.5
513,939 + GFF3081 0.54 -0.6
513,939 + GFF3081 0.54 -1.3
513,940 - GFF3081 0.55 -1.3
513,940 - GFF3081 0.55 -3.2
514,070 + -0.2
514,070 + -2.1
514,070 + +2.5
514,145 + +0.0
514,145 + +0.3
514,146 - -0.3
514,230 + GFF3082 0.25 +0.8
514,230 + GFF3082 0.25 -2.7
514,230 + GFF3082 0.25 -1.7
514,230 + GFF3082 0.25 -1.7
514,266 + GFF3082 0.33 -2.8
514,267 - GFF3082 0.33 -0.7
514,267 - GFF3082 0.33 -2.2
514,267 - GFF3082 0.33 -1.5
514,267 - GFF3082 0.33 -1.3
514,537 + -0.1
514,538 - -2.2
514,561 + +0.8
514,561 + -0.5
514,561 + -0.5
514,576 + -2.1
514,576 + -0.2
514,576 + -0.2
514,576 + -0.6
514,577 - +0.1
514,577 - -0.8
514,585 + +0.0
514,585 + -1.2
514,585 + +1.2
514,585 + -0.5
514,585 + -0.2
514,586 - +1.3
514,586 - -1.0
514,586 - -1.0
514,606 + -1.5
514,780 + GFF3084 0.63 -0.6
514,780 + GFF3084 0.63 -0.0
514,780 + GFF3084 0.63 -0.2
514,780 + GFF3084 0.63 -2.7
514,780 + GFF3084 0.63 +0.6
514,780 + GFF3084 0.63 -1.0
514,781 - GFF3084 0.64 +0.3
514,781 - GFF3084 0.64 +0.5
514,781 - GFF3084 0.64 -2.0
514,781 - GFF3084 0.64 +0.6
514,781 - GFF3084 0.64 -0.9
514,781 - GFF3084 0.64 +0.7
515,098 + -0.4
515,098 + -1.2
515,272 + GFF3085 0.53 -0.4
515,272 + GFF3085 0.53 -3.0
515,272 + GFF3085 0.53 -1.6
515,465 + -0.3
515,465 + +0.3
515,466 - -2.0
515,466 - -0.7
515,466 - +0.7
515,479 + -1.2
515,480 - +0.8
515,491 + -2.2
515,491 + -0.7
515,492 - +0.4
515,492 - +0.2
515,492 - -0.5

Or see this region's nucleotide sequence