Strain Fitness in Variovorax sp. SCN45 around GFF2956

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2955 and GFF2956 overlap by 4 nucleotidesGFF2956 and GFF2957 overlap by 4 nucleotides GFF2955 - hypothetical protein, at 378,753 to 380,450 GFF2955 GFF2956 - Uncharacterized protein YfaT, at 380,447 to 381,133 GFF2956 GFF2957 - UPF0192 protein YfaS, at 381,130 to 385,842 GFF2957 Position (kb) 380 381 382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 379.849 kb on - strand, within GFF2955at 379.849 kb on - strand, within GFF2955at 380.040 kb on + strand, within GFF2955at 380.040 kb on + strand, within GFF2955at 380.040 kb on + strand, within GFF2955at 380.041 kb on - strand, within GFF2955at 380.041 kb on - strand, within GFF2955at 380.064 kb on + strand, within GFF2955at 380.064 kb on + strand, within GFF2955at 380.064 kb on + strand, within GFF2955at 380.064 kb on + strand, within GFF2955at 380.064 kb on + strand, within GFF2955at 380.064 kb on + strand, within GFF2955at 380.065 kb on - strand, within GFF2955at 380.065 kb on - strand, within GFF2955at 380.065 kb on - strand, within GFF2955at 380.065 kb on - strand, within GFF2955at 380.065 kb on - strand, within GFF2955at 380.843 kb on + strand, within GFF2956at 380.843 kb on + strand, within GFF2956at 380.843 kb on + strand, within GFF2956at 380.843 kb on + strand, within GFF2956at 380.844 kb on - strand, within GFF2956at 380.844 kb on - strand, within GFF2956at 380.844 kb on - strand, within GFF2956at 380.930 kb on + strand, within GFF2956at 380.931 kb on - strand, within GFF2956at 380.931 kb on - strand, within GFF2956at 380.931 kb on - strand, within GFF2956at 380.931 kb on - strand, within GFF2956at 380.975 kb on + strand, within GFF2956at 380.975 kb on + strand, within GFF2956at 380.975 kb on + strand, within GFF2956at 380.975 kb on + strand, within GFF2956at 380.975 kb on + strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.976 kb on - strand, within GFF2956at 380.984 kb on + strand, within GFF2956at 380.985 kb on - strand, within GFF2956at 381.280 kb on + strandat 381.406 kb on + strandat 381.406 kb on + strandat 381.832 kb on + strand, within GFF2957at 381.832 kb on + strand, within GFF2957at 381.832 kb on + strand, within GFF2957at 381.832 kb on + strand, within GFF2957at 381.833 kb on - strand, within GFF2957at 381.833 kb on - strand, within GFF2957at 381.833 kb on - strand, within GFF2957at 381.833 kb on - strand, within GFF2957at 381.833 kb on - strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.072 kb on + strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.073 kb on - strand, within GFF2957at 382.126 kb on + strand, within GFF2957at 382.126 kb on + strand, within GFF2957at 382.126 kb on + strand, within GFF2957at 382.126 kb on + strand, within GFF2957at 382.127 kb on - strand, within GFF2957at 382.127 kb on - strand, within GFF2957at 382.127 kb on - strand, within GFF2957

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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379,849 - GFF2955 0.65 -0.8
379,849 - GFF2955 0.65 -1.4
380,040 + GFF2955 0.76 -2.0
380,040 + GFF2955 0.76 -1.3
380,040 + GFF2955 0.76 +0.9
380,041 - GFF2955 0.76 -0.1
380,041 - GFF2955 0.76 -0.3
380,064 + GFF2955 0.77 +1.9
380,064 + GFF2955 0.77 +0.6
380,064 + GFF2955 0.77 -3.8
380,064 + GFF2955 0.77 -1.1
380,064 + GFF2955 0.77 -4.1
380,064 + GFF2955 0.77 -0.0
380,065 - GFF2955 0.77 -2.6
380,065 - GFF2955 0.77 +0.5
380,065 - GFF2955 0.77 -1.4
380,065 - GFF2955 0.77 +0.3
380,065 - GFF2955 0.77 +1.4
380,843 + GFF2956 0.58 -0.4
380,843 + GFF2956 0.58 +0.4
380,843 + GFF2956 0.58 +0.8
380,843 + GFF2956 0.58 -0.1
380,844 - GFF2956 0.58 +0.1
380,844 - GFF2956 0.58 -1.5
380,844 - GFF2956 0.58 -1.8
380,930 + GFF2956 0.70 -2.0
380,931 - GFF2956 0.70 -1.0
380,931 - GFF2956 0.70 -2.5
380,931 - GFF2956 0.70 -1.1
380,931 - GFF2956 0.70 -1.0
380,975 + GFF2956 0.77 +0.9
380,975 + GFF2956 0.77 +0.9
380,975 + GFF2956 0.77 -2.8
380,975 + GFF2956 0.77 -0.5
380,975 + GFF2956 0.77 -0.1
380,976 - GFF2956 0.77 +0.5
380,976 - GFF2956 0.77 -2.2
380,976 - GFF2956 0.77 +0.6
380,976 - GFF2956 0.77 -1.8
380,976 - GFF2956 0.77 -1.5
380,976 - GFF2956 0.77 +0.4
380,976 - GFF2956 0.77 -2.2
380,976 - GFF2956 0.77 -1.6
380,976 - GFF2956 0.77 -1.3
380,976 - GFF2956 0.77 +0.8
380,976 - GFF2956 0.77 -0.0
380,976 - GFF2956 0.77 +1.5
380,976 - GFF2956 0.77 +0.2
380,976 - GFF2956 0.77 -0.5
380,976 - GFF2956 0.77 -1.3
380,976 - GFF2956 0.77 -0.1
380,984 + GFF2956 0.78 -0.7
380,985 - GFF2956 0.78 -2.4
381,280 + +0.1
381,406 + -0.1
381,406 + -3.0
381,832 + GFF2957 0.15 -1.3
381,832 + GFF2957 0.15 +0.3
381,832 + GFF2957 0.15 -0.2
381,832 + GFF2957 0.15 -0.1
381,833 - GFF2957 0.15 +1.7
381,833 - GFF2957 0.15 -0.5
381,833 - GFF2957 0.15 -3.0
381,833 - GFF2957 0.15 -0.6
381,833 - GFF2957 0.15 +3.7
382,072 + GFF2957 0.20 -2.5
382,072 + GFF2957 0.20 -2.1
382,072 + GFF2957 0.20 +0.8
382,072 + GFF2957 0.20 +0.5
382,072 + GFF2957 0.20 -0.7
382,072 + GFF2957 0.20 +1.9
382,072 + GFF2957 0.20 +1.6
382,072 + GFF2957 0.20 -0.6
382,072 + GFF2957 0.20 -0.5
382,073 - GFF2957 0.20 -0.6
382,073 - GFF2957 0.20 +1.0
382,073 - GFF2957 0.20 -0.5
382,073 - GFF2957 0.20 +1.2
382,073 - GFF2957 0.20 +0.3
382,073 - GFF2957 0.20 -1.5
382,073 - GFF2957 0.20 -0.3
382,073 - GFF2957 0.20 +0.8
382,073 - GFF2957 0.20 +0.3
382,073 - GFF2957 0.20 -0.0
382,073 - GFF2957 0.20 -0.8
382,126 + GFF2957 0.21 +0.8
382,126 + GFF2957 0.21 -1.0
382,126 + GFF2957 0.21 +1.1
382,126 + GFF2957 0.21 -2.0
382,127 - GFF2957 0.21 -0.8
382,127 - GFF2957 0.21 -3.3
382,127 - GFF2957 0.21 +0.7

Or see this region's nucleotide sequence