Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2832 and GFF2833 are separated by 81 nucleotides GFF2833 and GFF2834 are separated by 114 nucleotides GFF2834 and GFF2835 are separated by 77 nucleotides
GFF2832 - Uncharacterized protein PA4513, at 259,301 to 260,668
GFF2832
GFF2833 - PKHD-type hydroxylase YbiX, at 260,750 to 261,430
GFF2833
GFF2834 - Bacterioferritin-associated ferredoxin, at 261,545 to 261,817
GFF2834
GFF2835 - putative TonB-dependent receptor, at 261,895 to 262,620
GFF2835
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 259.885 kb on - strand, within GFF2832 at 259.885 kb on - strand, within GFF2832 at 260.078 kb on + strand, within GFF2832 at 260.078 kb on + strand, within GFF2832 at 260.078 kb on + strand, within GFF2832 at 260.078 kb on + strand, within GFF2832 at 260.079 kb on - strand, within GFF2832 at 260.079 kb on - strand, within GFF2832 at 260.355 kb on + strand, within GFF2832 at 260.355 kb on + strand, within GFF2832 at 260.355 kb on + strand, within GFF2832 at 260.355 kb on + strand, within GFF2832 at 260.355 kb on + strand, within GFF2832 at 260.355 kb on + strand, within GFF2832 at 260.356 kb on - strand, within GFF2832 at 260.356 kb on - strand, within GFF2832 at 260.356 kb on - strand, within GFF2832 at 260.356 kb on - strand, within GFF2832 at 260.356 kb on - strand, within GFF2832 at 260.443 kb on + strand, within GFF2832 at 260.443 kb on + strand, within GFF2832 at 260.443 kb on + strand, within GFF2832 at 260.443 kb on + strand, within GFF2832 at 260.443 kb on + strand, within GFF2832 at 260.444 kb on - strand, within GFF2832 at 260.444 kb on - strand, within GFF2832 at 260.444 kb on - strand, within GFF2832 at 260.444 kb on - strand, within GFF2832 at 260.444 kb on - strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.477 kb on + strand, within GFF2832 at 260.478 kb on - strand, within GFF2832 at 260.478 kb on - strand, within GFF2832 at 260.478 kb on - strand, within GFF2832 at 260.478 kb on - strand, within GFF2832 at 260.478 kb on - strand, within GFF2832 at 260.478 kb on - strand, within GFF2832 at 260.510 kb on - strand, within GFF2832 at 260.510 kb on - strand, within GFF2832 at 260.510 kb on - strand, within GFF2832 at 260.510 kb on - strand, within GFF2832 at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.546 kb on + strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.547 kb on - strand at 260.663 kb on + strand at 260.664 kb on - strand at 260.664 kb on - strand at 260.664 kb on - strand at 260.722 kb on - strand at 260.745 kb on + strand at 260.803 kb on + strand at 260.804 kb on - strand at 260.804 kb on - strand at 261.008 kb on + strand, within GFF2833 at 261.008 kb on + strand, within GFF2833 at 261.009 kb on - strand, within GFF2833 at 261.026 kb on + strand, within GFF2833 at 261.026 kb on + strand, within GFF2833 at 261.027 kb on - strand, within GFF2833 at 261.027 kb on - strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.128 kb on + strand, within GFF2833 at 261.129 kb on - strand, within GFF2833 at 261.129 kb on - strand, within GFF2833 at 261.129 kb on - strand, within GFF2833 at 261.129 kb on - strand, within GFF2833 at 261.129 kb on - strand, within GFF2833 at 261.129 kb on - strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.161 kb on + strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.162 kb on - strand, within GFF2833 at 261.395 kb on + strand at 261.395 kb on + strand at 261.395 kb on + strand at 261.395 kb on + strand at 261.395 kb on + strand at 261.395 kb on + strand at 261.395 kb on + strand at 261.395 kb on + strand at 261.396 kb on - strand at 261.396 kb on - strand at 261.396 kb on - strand at 261.396 kb on - strand at 261.460 kb on + strand at 261.461 kb on - strand at 261.468 kb on + strand at 261.468 kb on + strand at 261.468 kb on + strand at 261.468 kb on + strand at 261.468 kb on + strand at 261.469 kb on - strand at 261.469 kb on - strand at 261.469 kb on - strand at 261.856 kb on + strand at 261.856 kb on + strand at 261.856 kb on + strand at 261.856 kb on + strand at 261.856 kb on + strand at 261.857 kb on - strand at 261.857 kb on - strand at 261.857 kb on - strand at 261.877 kb on - strand at 261.917 kb on + strand at 261.918 kb on - strand at 261.918 kb on - strand at 262.161 kb on + strand, within GFF2835 at 262.161 kb on + strand, within GFF2835 at 262.161 kb on + strand, within GFF2835 at 262.162 kb on - strand, within GFF2835 at 262.367 kb on - strand, within GFF2835 at 262.390 kb on + strand, within GFF2835
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 259,885 - GFF2832 0.43 +0.4 259,885 - GFF2832 0.43 +1.5 260,078 + GFF2832 0.57 -2.3 260,078 + GFF2832 0.57 -1.7 260,078 + GFF2832 0.57 -1.6 260,078 + GFF2832 0.57 +0.0 260,079 - GFF2832 0.57 -1.9 260,079 - GFF2832 0.57 +0.1 260,355 + GFF2832 0.77 -1.1 260,355 + GFF2832 0.77 -1.5 260,355 + GFF2832 0.77 +0.9 260,355 + GFF2832 0.77 -1.1 260,355 + GFF2832 0.77 -3.3 260,355 + GFF2832 0.77 -0.5 260,356 - GFF2832 0.77 -1.0 260,356 - GFF2832 0.77 -2.7 260,356 - GFF2832 0.77 -1.3 260,356 - GFF2832 0.77 -0.0 260,356 - GFF2832 0.77 -1.5 260,443 + GFF2832 0.83 +0.3 260,443 + GFF2832 0.83 +2.7 260,443 + GFF2832 0.83 +2.2 260,443 + GFF2832 0.83 -3.0 260,443 + GFF2832 0.83 +1.1 260,444 - GFF2832 0.84 +0.2 260,444 - GFF2832 0.84 -0.7 260,444 - GFF2832 0.84 +1.2 260,444 - GFF2832 0.84 -1.7 260,444 - GFF2832 0.84 -1.1 260,477 + GFF2832 0.86 -0.4 260,477 + GFF2832 0.86 +0.1 260,477 + GFF2832 0.86 -1.0 260,477 + GFF2832 0.86 +0.1 260,477 + GFF2832 0.86 -0.5 260,477 + GFF2832 0.86 -2.0 260,477 + GFF2832 0.86 -0.1 260,477 + GFF2832 0.86 -0.7 260,477 + GFF2832 0.86 -0.8 260,477 + GFF2832 0.86 +2.9 260,478 - GFF2832 0.86 -1.2 260,478 - GFF2832 0.86 +0.2 260,478 - GFF2832 0.86 +1.5 260,478 - GFF2832 0.86 -1.1 260,478 - GFF2832 0.86 -2.1 260,478 - GFF2832 0.86 +1.4 260,510 - GFF2832 0.88 +1.3 260,510 - GFF2832 0.88 -1.1 260,510 - GFF2832 0.88 +0.1 260,510 - GFF2832 0.88 +1.2 260,546 + -1.3 260,546 + -0.3 260,546 + +1.4 260,546 + -0.0 260,546 + +0.2 260,546 + -0.3 260,546 + -0.7 260,546 + +1.4 260,546 + -1.5 260,546 + +0.3 260,546 + +0.9 260,546 + +0.3 260,546 + -2.8 260,546 + +1.1 260,546 + -1.6 260,546 + +0.0 260,546 + -0.5 260,546 + -1.8 260,546 + +0.4 260,546 + +0.6 260,546 + -0.3 260,547 - +0.4 260,547 - -0.0 260,547 - -0.5 260,547 - -2.0 260,547 - +0.3 260,547 - -2.1 260,547 - -1.0 260,547 - +0.9 260,547 - -1.4 260,547 - -1.1 260,547 - -0.6 260,547 - -1.7 260,547 - +1.4 260,547 - -0.1 260,547 - -0.1 260,547 - -1.7 260,663 + -1.6 260,664 - -1.8 260,664 - -0.1 260,664 - -0.0 260,722 - -0.1 260,745 + +1.3 260,803 + -1.1 260,804 - -0.3 260,804 - -0.1 261,008 + GFF2833 0.38 -2.4 261,008 + GFF2833 0.38 -1.7 261,009 - GFF2833 0.38 -0.3 261,026 + GFF2833 0.41 -0.1 261,026 + GFF2833 0.41 -0.3 261,027 - GFF2833 0.41 -0.7 261,027 - GFF2833 0.41 -1.6 261,128 + GFF2833 0.56 -2.1 261,128 + GFF2833 0.56 +0.3 261,128 + GFF2833 0.56 -1.1 261,128 + GFF2833 0.56 -2.0 261,128 + GFF2833 0.56 -1.6 261,128 + GFF2833 0.56 -0.8 261,128 + GFF2833 0.56 -0.3 261,128 + GFF2833 0.56 +1.9 261,128 + GFF2833 0.56 -1.7 261,129 - GFF2833 0.56 -1.3 261,129 - GFF2833 0.56 -1.1 261,129 - GFF2833 0.56 -3.1 261,129 - GFF2833 0.56 -1.3 261,129 - GFF2833 0.56 -2.2 261,129 - GFF2833 0.56 -0.6 261,161 + GFF2833 0.60 -0.2 261,161 + GFF2833 0.60 +0.7 261,161 + GFF2833 0.60 +0.2 261,161 + GFF2833 0.60 +0.0 261,161 + GFF2833 0.60 -2.5 261,161 + GFF2833 0.60 -1.8 261,161 + GFF2833 0.60 -1.9 261,161 + GFF2833 0.60 -0.9 261,161 + GFF2833 0.60 -1.7 261,161 + GFF2833 0.60 -3.0 261,161 + GFF2833 0.60 -0.5 261,162 - GFF2833 0.60 -0.6 261,162 - GFF2833 0.60 -0.7 261,162 - GFF2833 0.60 -0.0 261,162 - GFF2833 0.60 -2.5 261,162 - GFF2833 0.60 -0.5 261,162 - GFF2833 0.60 -0.5 261,162 - GFF2833 0.60 -0.7 261,162 - GFF2833 0.60 +0.7 261,162 - GFF2833 0.60 -0.2 261,162 - GFF2833 0.60 +0.7 261,162 - GFF2833 0.60 +0.5 261,162 - GFF2833 0.60 +1.1 261,162 - GFF2833 0.60 +0.1 261,162 - GFF2833 0.60 -1.5 261,162 - GFF2833 0.60 -1.3 261,162 - GFF2833 0.60 -1.8 261,162 - GFF2833 0.60 -1.5 261,162 - GFF2833 0.60 +0.4 261,162 - GFF2833 0.60 -0.7 261,162 - GFF2833 0.60 -2.1 261,162 - GFF2833 0.60 +0.4 261,162 - GFF2833 0.60 -1.4 261,395 + -0.0 261,395 + +0.9 261,395 + -1.5 261,395 + +2.0 261,395 + -0.3 261,395 + -1.7 261,395 + +0.2 261,395 + -0.9 261,396 - -3.5 261,396 - +0.6 261,396 - +1.9 261,396 - -1.8 261,460 + +0.7 261,461 - -0.9 261,468 + -2.3 261,468 + +0.1 261,468 + -0.8 261,468 + +0.7 261,468 + +0.7 261,469 - -2.5 261,469 - +0.7 261,469 - -2.1 261,856 + +0.3 261,856 + -2.1 261,856 + +0.3 261,856 + +0.6 261,856 + +0.4 261,857 - +0.9 261,857 - +0.3 261,857 - +0.9 261,877 - -1.3 261,917 + +0.7 261,918 - +1.9 261,918 - -1.3 262,161 + GFF2835 0.37 +1.9 262,161 + GFF2835 0.37 +0.9 262,161 + GFF2835 0.37 +1.9 262,162 - GFF2835 0.37 +1.9 262,367 - GFF2835 0.65 +1.9 262,390 + GFF2835 0.68 +1.9
Or see this region's nucleotide sequence