Strain Fitness in Variovorax sp. SCN45 around GFF2815

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2812 and GFF2813 are separated by 170 nucleotidesGFF2813 and GFF2814 are separated by 12 nucleotidesGFF2814 and GFF2815 are separated by 21 nucleotidesGFF2815 and GFF2816 are separated by 76 nucleotidesGFF2816 and GFF2817 are separated by 116 nucleotides GFF2812 - Replicative DNA helicase (DnaB) (EC 3.6.4.12), at 239,701 to 241,107 GFF2812 GFF2813 - LSU ribosomal protein L9p, at 241,278 to 241,730 GFF2813 GFF2814 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 241,743 to 242,024 GFF2814 GFF2815 - Primosomal replication protein N, at 242,046 to 242,288 GFF2815 GFF2816 - SSU ribosomal protein S6p, at 242,365 to 242,739 GFF2816 GFF2817 - Probable proline-rich protein, at 242,856 to 243,326 GFF2817 Position (kb) 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 241.133 kb on + strandat 241.133 kb on + strandat 241.133 kb on + strandat 241.133 kb on + strandat 241.133 kb on + strandat 241.133 kb on + strandat 241.133 kb on + strandat 241.133 kb on + strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.134 kb on - strandat 241.174 kb on + strandat 241.174 kb on + strandat 241.174 kb on + strandat 241.175 kb on - strandat 241.175 kb on - strandat 241.294 kb on + strandat 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.411 kb on + strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.412 kb on - strand, within GFF2813at 241.657 kb on + strand, within GFF2813at 241.723 kb on - strandat 241.744 kb on + strandat 241.744 kb on + strandat 241.744 kb on + strandat 241.745 kb on - strandat 241.745 kb on - strandat 241.765 kb on + strandat 241.766 kb on - strandat 242.070 kb on - strandat 242.070 kb on - strandat 242.070 kb on - strandat 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.385 kb on - strandat 242.385 kb on - strandat 242.385 kb on - strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.832 kb on + strandat 242.832 kb on + strandat 242.833 kb on - strandat 242.833 kb on - strandat 242.833 kb on - strandat 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 243.026 kb on - strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.287 kb on + strandat 243.287 kb on + strandat 243.287 kb on + strandat 243.288 kb on - strandat 243.288 kb on - strandat 243.288 kb on - strandat 243.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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241,133 + -3.1
241,133 + -1.1
241,133 + +1.4
241,133 + -2.3
241,133 + -0.5
241,133 + +1.6
241,133 + -0.1
241,133 + +0.4
241,134 - -3.2
241,134 - -1.0
241,134 - -1.1
241,134 - -2.5
241,134 - -1.8
241,134 - -0.3
241,134 - +1.7
241,134 - -2.1
241,134 - +3.1
241,174 + -0.9
241,174 + -0.9
241,174 + +0.3
241,175 - +0.2
241,175 - -1.1
241,294 + -1.6
241,411 + GFF2813 0.29 -1.7
241,411 + GFF2813 0.29 +0.3
241,411 + GFF2813 0.29 -0.6
241,411 + GFF2813 0.29 -2.3
241,411 + GFF2813 0.29 +2.1
241,411 + GFF2813 0.29 -0.5
241,411 + GFF2813 0.29 -1.8
241,411 + GFF2813 0.29 -1.3
241,411 + GFF2813 0.29 +0.9
241,412 - GFF2813 0.30 +0.1
241,412 - GFF2813 0.30 -0.3
241,412 - GFF2813 0.30 -1.3
241,412 - GFF2813 0.30 -1.2
241,412 - GFF2813 0.30 +0.1
241,412 - GFF2813 0.30 -1.3
241,412 - GFF2813 0.30 -0.3
241,412 - GFF2813 0.30 -0.1
241,412 - GFF2813 0.30 -2.1
241,412 - GFF2813 0.30 -0.5
241,412 - GFF2813 0.30 -0.2
241,412 - GFF2813 0.30 +0.9
241,657 + GFF2813 0.84 +1.9
241,723 - -1.6
241,744 + -1.3
241,744 + +2.3
241,744 + -0.1
241,745 - -0.7
241,745 - +1.9
241,765 + +1.9
241,766 - +0.3
242,070 - -2.1
242,070 - -1.1
242,070 - -1.8
242,214 - GFF2815 0.69 -1.3
242,214 - GFF2815 0.69 -2.4
242,214 - GFF2815 0.69 -2.3
242,214 - GFF2815 0.69 -0.7
242,214 - GFF2815 0.69 -3.3
242,385 - +0.1
242,385 - -1.8
242,385 - -1.6
242,824 + -1.1
242,824 + -0.5
242,824 + -2.9
242,824 + -0.5
242,824 + +0.7
242,825 - -1.5
242,825 - -1.0
242,825 - +1.6
242,825 - -2.8
242,825 - +1.1
242,825 - -1.5
242,825 - +0.1
242,832 + -0.5
242,832 + -1.7
242,833 - +0.8
242,833 - -2.6
242,833 - +0.7
242,944 + GFF2817 0.19 +0.1
242,944 + GFF2817 0.19 +1.0
242,944 + GFF2817 0.19 -0.6
242,944 + GFF2817 0.19 -1.0
242,944 + GFF2817 0.19 -0.4
242,944 + GFF2817 0.19 +1.6
242,944 + GFF2817 0.19 +1.5
242,944 + GFF2817 0.19 +1.2
242,944 + GFF2817 0.19 -2.8
242,944 + GFF2817 0.19 +0.9
242,944 + GFF2817 0.19 -0.5
242,944 + GFF2817 0.19 -1.7
242,944 + GFF2817 0.19 +2.0
242,944 + GFF2817 0.19 -1.1
242,944 + GFF2817 0.19 -2.1
242,944 + GFF2817 0.19 +0.3
242,945 - GFF2817 0.19 -1.0
242,945 - GFF2817 0.19 -2.7
242,945 - GFF2817 0.19 +0.5
242,945 - GFF2817 0.19 +0.3
242,945 - GFF2817 0.19 +0.2
242,945 - GFF2817 0.19 +1.0
242,945 - GFF2817 0.19 +1.1
242,945 - GFF2817 0.19 -0.4
242,945 - GFF2817 0.19 +0.3
242,945 - GFF2817 0.19 +0.8
242,945 - GFF2817 0.19 +0.7
242,945 - GFF2817 0.19 -0.1
242,945 - GFF2817 0.19 +1.0
242,945 - GFF2817 0.19 +0.2
243,026 - GFF2817 0.36 +0.6
243,037 + GFF2817 0.38 +1.0
243,037 + GFF2817 0.38 +0.9
243,037 + GFF2817 0.38 -1.5
243,037 + GFF2817 0.38 -0.6
243,038 - GFF2817 0.39 -1.8
243,038 - GFF2817 0.39 -0.8
243,038 - GFF2817 0.39 -0.3
243,038 - GFF2817 0.39 -1.3
243,038 - GFF2817 0.39 +2.1
243,038 - GFF2817 0.39 +1.4
243,038 - GFF2817 0.39 +0.3
243,038 - GFF2817 0.39 -1.6
243,287 + +0.3
243,287 + -0.1
243,287 + -1.1
243,288 - +2.1
243,288 - -0.8
243,288 - +0.1
243,288 - -1.3

Or see this region's nucleotide sequence