Strain Fitness in Variovorax sp. SCN45 around GFF273

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF271 and GFF272 overlap by 4 nucleotidesGFF272 and GFF273 are separated by 108 nucleotidesGFF273 and GFF274 are separated by 154 nucleotides GFF271 - 2-methylcitrate synthase (EC 2.3.3.5), at 307,217 to 308,380 GFF271 GFF272 - thioesterase superfamily protein, at 308,377 to 308,817 GFF272 GFF273 - Transcriptional regulator, Xre family, at 308,926 to 310,347 GFF273 GFF274 - Probable RNA methyltransferase PA1839, at 310,502 to 311,548 GFF274 Position (kb) 308 309 310 311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 307.936 kb on - strand, within GFF271at 307.936 kb on - strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.941 kb on + strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 307.942 kb on - strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.151 kb on + strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.152 kb on - strand, within GFF271at 308.194 kb on + strand, within GFF271at 308.257 kb on - strand, within GFF271at 308.257 kb on - strand, within GFF271at 308.414 kb on + strandat 308.415 kb on - strandat 308.415 kb on - strandat 308.723 kb on + strand, within GFF272at 308.723 kb on + strand, within GFF272at 308.822 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.025 kb on + strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.026 kb on - strandat 309.730 kb on + strand, within GFF273at 309.730 kb on + strand, within GFF273at 309.730 kb on + strand, within GFF273at 309.793 kb on + strand, within GFF273at 309.794 kb on - strand, within GFF273at 309.997 kb on + strand, within GFF273at 309.997 kb on + strand, within GFF273at 309.997 kb on + strand, within GFF273at 309.998 kb on - strand, within GFF273at 309.998 kb on - strand, within GFF273at 309.998 kb on - strand, within GFF273at 309.998 kb on - strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.063 kb on + strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.064 kb on - strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.174 kb on + strand, within GFF273at 310.175 kb on - strand, within GFF273at 310.175 kb on - strand, within GFF273at 310.175 kb on - strand, within GFF273at 310.175 kb on - strand, within GFF273at 310.175 kb on - strand, within GFF273at 310.327 kb on + strandat 310.327 kb on + strandat 310.327 kb on + strandat 310.327 kb on + strandat 310.327 kb on + strandat 310.328 kb on - strandat 310.503 kb on + strandat 310.503 kb on + strandat 310.503 kb on + strandat 310.503 kb on + strandat 310.503 kb on + strandat 310.503 kb on + strandat 310.503 kb on + strandat 310.504 kb on - strandat 310.504 kb on - strandat 310.504 kb on - strandat 310.504 kb on - strandat 310.504 kb on - strandat 310.504 kb on - strandat 310.504 kb on - strandat 310.737 kb on + strand, within GFF274at 310.737 kb on + strand, within GFF274at 310.737 kb on + strand, within GFF274at 310.737 kb on + strand, within GFF274at 310.737 kb on + strand, within GFF274at 310.738 kb on - strand, within GFF274at 310.815 kb on + strand, within GFF274at 310.816 kb on - strand, within GFF274at 310.845 kb on + strand, within GFF274at 310.846 kb on - strand, within GFF274

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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307,936 - GFF271 0.62 -1.7
307,936 - GFF271 0.62 -3.7
307,941 + GFF271 0.62 -2.7
307,941 + GFF271 0.62 +0.0
307,941 + GFF271 0.62 -3.8
307,941 + GFF271 0.62 +2.2
307,941 + GFF271 0.62 -1.4
307,942 - GFF271 0.62 -0.8
307,942 - GFF271 0.62 -1.7
307,942 - GFF271 0.62 -3.3
307,942 - GFF271 0.62 -1.9
307,942 - GFF271 0.62 -1.2
307,942 - GFF271 0.62 -0.7
307,942 - GFF271 0.62 -3.7
308,151 + GFF271 0.80 -1.7
308,151 + GFF271 0.80 -1.0
308,151 + GFF271 0.80 -2.4
308,151 + GFF271 0.80 -2.4
308,152 - GFF271 0.80 -1.0
308,152 - GFF271 0.80 -1.2
308,152 - GFF271 0.80 -3.8
308,152 - GFF271 0.80 -2.6
308,152 - GFF271 0.80 -2.4
308,152 - GFF271 0.80 -2.7
308,194 + GFF271 0.84 +0.6
308,257 - GFF271 0.89 -3.7
308,257 - GFF271 0.89 -2.8
308,414 + -0.1
308,415 - +0.7
308,415 - +1.6
308,723 + GFF272 0.78 -3.9
308,723 + GFF272 0.78 -1.2
308,822 + -4.6
309,025 + -2.8
309,025 + +1.2
309,025 + +0.9
309,025 + -0.2
309,026 - -0.6
309,026 - -0.4
309,026 - -2.2
309,026 - -2.4
309,026 - -1.6
309,730 + GFF273 0.57 -0.4
309,730 + GFF273 0.57 -2.2
309,730 + GFF273 0.57 -1.3
309,793 + GFF273 0.61 -1.7
309,794 - GFF273 0.61 -2.1
309,997 + GFF273 0.75 -3.1
309,997 + GFF273 0.75 -0.7
309,997 + GFF273 0.75 -1.6
309,998 - GFF273 0.75 -1.9
309,998 - GFF273 0.75 -3.3
309,998 - GFF273 0.75 -1.6
309,998 - GFF273 0.75 -0.7
310,063 + GFF273 0.80 -3.1
310,063 + GFF273 0.80 +0.0
310,063 + GFF273 0.80 -2.2
310,063 + GFF273 0.80 -1.0
310,063 + GFF273 0.80 -2.9
310,063 + GFF273 0.80 -1.6
310,063 + GFF273 0.80 -1.0
310,063 + GFF273 0.80 -1.1
310,063 + GFF273 0.80 -1.1
310,063 + GFF273 0.80 +0.6
310,064 - GFF273 0.80 -2.2
310,064 - GFF273 0.80 -0.7
310,064 - GFF273 0.80 -1.2
310,064 - GFF273 0.80 -0.7
310,064 - GFF273 0.80 -2.2
310,064 - GFF273 0.80 -1.0
310,064 - GFF273 0.80 -2.6
310,174 + GFF273 0.88 -1.0
310,174 + GFF273 0.88 +0.7
310,174 + GFF273 0.88 -1.4
310,174 + GFF273 0.88 -3.4
310,174 + GFF273 0.88 -3.9
310,174 + GFF273 0.88 -2.1
310,174 + GFF273 0.88 -1.6
310,174 + GFF273 0.88 -1.6
310,175 - GFF273 0.88 -1.1
310,175 - GFF273 0.88 -3.3
310,175 - GFF273 0.88 -3.0
310,175 - GFF273 0.88 +0.5
310,175 - GFF273 0.88 -0.7
310,327 + -0.5
310,327 + -1.4
310,327 + -0.6
310,327 + -0.2
310,327 + -1.2
310,328 - +1.7
310,503 + +0.6
310,503 + +0.3
310,503 + -0.2
310,503 + -0.5
310,503 + -0.4
310,503 + +1.6
310,503 + -1.0
310,504 - -2.4
310,504 - -1.2
310,504 - +0.2
310,504 - +0.2
310,504 - +0.4
310,504 - -0.6
310,504 - +0.8
310,737 + GFF274 0.22 +0.4
310,737 + GFF274 0.22 +2.7
310,737 + GFF274 0.22 -1.0
310,737 + GFF274 0.22 -2.9
310,737 + GFF274 0.22 +2.7
310,738 - GFF274 0.23 +0.0
310,815 + GFF274 0.30 +2.3
310,816 - GFF274 0.30 +0.3
310,845 + GFF274 0.33 -0.1
310,846 - GFF274 0.33 -1.5

Or see this region's nucleotide sequence