Strain Fitness in Variovorax sp. SCN45 around GFF2729

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
162,792	+				-0.3
162,792	+				+0.8
162,792	+				-0.1
162,793	-				+1.2
162,793	-				-1.6
162,793	-				+4.4
162,862	-				-1.8
162,862	-				-0.7
162,870	+				+2.1
162,870	+				-1.2
162,870	+				+0.8
162,870	+				-3.1
162,870	+				-2.6
162,870	+				-0.5
162,870	+				-2.3
162,871	-				+0.8
162,871	-				+1.3
162,871	-				+0.5
162,871	-				-1.2
162,871	-				+1.2
162,871	-				+1.0
162,871	-				+0.8
162,871	-				-1.0
162,871	-				-0.7
162,918	+				-0.3
162,918	+				+1.6
162,918	+				-1.1
162,918	+				+0.6
162,919	-				-1.3
162,919	-				+1.8
162,933	+				+4.6
162,933	+				+0.3
162,951	+				+2.0
162,952	-				+0.8
162,952	-				-0.2
163,132	+				-0.7
163,133	-				+0.4
163,204	+				-1.5
163,205	-				-1.3
163,254	+				+1.7
163,254	+				-2.2
163,255	-				-0.4
163,286	+				-1.5
163,286	+				-2.2
163,374	+				+1.1
163,374	+				+0.1
163,374	+				-0.1
163,374	+				+0.6
163,374	+				+0.6
163,375	-				-0.7
163,375	-				-1.6
163,375	-				+1.8
163,560	+				-0.6
163,560	+				+0.1
163,561	-				-1.8
163,579	+				-0.5
163,580	-				+1.8
163,580	-				+1.6
163,580	-				-1.5
163,593	+				+0.7
163,593	+				-0.7
163,593	+				-0.5
163,625	+				+0.4
163,626	-				+0.4
163,652	+				-0.5
163,721	+				+1.8
163,721	+				-1.3
163,721	+				-1.5
163,721	+				-1.0
163,722	-				-0.5
163,722	-				-2.2
163,754	+				-2.7
163,754	+				-0.1
163,755	-				-1.9
163,907	+		GFF2729	0.66	-2.6
163,907	+		GFF2729	0.66	-0.2
163,907	+		GFF2729	0.66	-1.7
163,907	+		GFF2729	0.66	-2.2
163,907	+		GFF2729	0.66	+1.3
163,907	+		GFF2729	0.66	-2.8
163,907	+		GFF2729	0.66	-1.3
163,907	+		GFF2729	0.66	-2.4
163,907	+		GFF2729	0.66	-2.9
163,907	+		GFF2729	0.66	-0.6
163,907	+		GFF2729	0.66	-1.9
163,907	+		GFF2729	0.66	-0.2
163,907	+		GFF2729	0.66	+0.4
163,907	+		GFF2729	0.66	-1.6
163,907	+		GFF2729	0.66	+2.6
163,907	+		GFF2729	0.66	+0.2
163,908	-		GFF2729	0.67	-0.0
163,908	-		GFF2729	0.67	+3.4
163,908	-		GFF2729	0.67	+2.7
163,908	-		GFF2729	0.67	+1.1
163,908	-		GFF2729	0.67	+0.0
163,908	-		GFF2729	0.67	-1.1
163,908	-		GFF2729	0.67	+0.7
163,908	-		GFF2729	0.67	+0.8
163,908	-		GFF2729	0.67	-1.6
163,908	-		GFF2729	0.67	+0.4
163,908	-		GFF2729	0.67	-1.0
163,908	-		GFF2729	0.67	-3.6
163,908	-		GFF2729	0.67	-0.2
163,908	-		GFF2729	0.67	-3.2
163,908	-		GFF2729	0.67	-1.3
163,908	-		GFF2729	0.67	+2.0
163,908	-		GFF2729	0.67	-0.7
163,908	-		GFF2729	0.67	+1.0
163,908	-		GFF2729	0.67	+2.5
163,908	-		GFF2729	0.67	+0.2
164,350	-		GFF2730	0.16	-0.7
164,411	-		GFF2730	0.18	+1.8
164,411	-		GFF2730	0.18	+0.8
164,660	-		GFF2730	0.29	-0.2
164,660	-		GFF2730	0.29	-0.5
164,660	-		GFF2730	0.29	+0.8