Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2620 and GFF2621 are separated by 278 nucleotides GFF2621 and GFF2622 are separated by 38 nucleotides
GFF2620 - VgrG protein, at 26,951 to 29,917
GFF2620
GFF2621 - YidE/YbjL duplication, at 30,196 to 31,884
GFF2621
GFF2622 - Putative transport protein, at 31,923 to 33,611
GFF2622
Position (kb) 30
31
32 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 29.231 kb on + strand, within GFF2620 at 29.238 kb on + strand, within GFF2620 at 29.238 kb on + strand, within GFF2620 at 29.238 kb on + strand, within GFF2620 at 29.238 kb on + strand, within GFF2620 at 29.239 kb on - strand, within GFF2620 at 29.239 kb on - strand, within GFF2620 at 29.250 kb on + strand, within GFF2620 at 29.250 kb on + strand, within GFF2620 at 29.250 kb on + strand, within GFF2620 at 29.251 kb on - strand, within GFF2620 at 29.251 kb on - strand, within GFF2620 at 29.251 kb on - strand, within GFF2620 at 29.251 kb on - strand, within GFF2620 at 29.251 kb on - strand, within GFF2620 at 29.251 kb on - strand, within GFF2620 at 29.292 kb on + strand, within GFF2620 at 29.292 kb on + strand, within GFF2620 at 29.292 kb on + strand, within GFF2620 at 29.292 kb on + strand, within GFF2620 at 29.292 kb on + strand, within GFF2620 at 29.293 kb on - strand, within GFF2620 at 29.293 kb on - strand, within GFF2620 at 29.293 kb on - strand, within GFF2620 at 29.293 kb on - strand, within GFF2620 at 29.293 kb on - strand, within GFF2620 at 29.293 kb on - strand, within GFF2620 at 29.338 kb on - strand, within GFF2620 at 29.430 kb on + strand, within GFF2620 at 29.430 kb on + strand, within GFF2620 at 29.431 kb on - strand, within GFF2620 at 29.431 kb on - strand, within GFF2620 at 29.433 kb on + strand, within GFF2620 at 29.433 kb on + strand, within GFF2620 at 29.433 kb on + strand, within GFF2620 at 29.433 kb on + strand, within GFF2620 at 29.433 kb on + strand, within GFF2620 at 29.434 kb on - strand, within GFF2620 at 29.434 kb on - strand, within GFF2620 at 29.434 kb on - strand, within GFF2620 at 29.434 kb on - strand, within GFF2620 at 29.434 kb on - strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.436 kb on + strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.437 kb on - strand, within GFF2620 at 29.490 kb on + strand, within GFF2620 at 29.491 kb on - strand, within GFF2620 at 29.491 kb on - strand, within GFF2620 at 29.502 kb on + strand, within GFF2620 at 29.502 kb on + strand, within GFF2620 at 29.502 kb on + strand, within GFF2620 at 29.502 kb on + strand, within GFF2620 at 29.502 kb on + strand, within GFF2620 at 29.503 kb on - strand, within GFF2620 at 29.503 kb on - strand, within GFF2620 at 29.503 kb on - strand, within GFF2620 at 29.503 kb on - strand, within GFF2620 at 29.556 kb on + strand, within GFF2620 at 29.664 kb on + strand at 29.724 kb on + strand at 29.724 kb on + strand at 29.725 kb on - strand at 29.725 kb on - strand at 29.725 kb on - strand at 29.816 kb on + strand at 29.829 kb on + strand at 29.829 kb on + strand at 29.829 kb on + strand at 29.829 kb on + strand at 29.830 kb on - strand at 29.939 kb on + strand at 29.940 kb on - strand at 29.971 kb on + strand at 29.972 kb on - strand at 29.977 kb on + strand at 29.977 kb on + strand at 29.977 kb on + strand at 29.978 kb on - strand at 30.052 kb on + strand at 30.171 kb on + strand at 30.265 kb on + strand at 30.265 kb on + strand at 30.679 kb on + strand, within GFF2621 at 30.679 kb on + strand, within GFF2621 at 30.679 kb on + strand, within GFF2621 at 30.679 kb on + strand, within GFF2621 at 30.679 kb on + strand, within GFF2621 at 30.680 kb on - strand, within GFF2621 at 30.680 kb on - strand, within GFF2621 at 30.680 kb on - strand, within GFF2621 at 30.680 kb on - strand, within GFF2621 at 30.680 kb on - strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.691 kb on + strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.692 kb on - strand, within GFF2621 at 30.969 kb on + strand, within GFF2621 at 30.969 kb on + strand, within GFF2621 at 30.970 kb on - strand, within GFF2621 at 30.970 kb on - strand, within GFF2621 at 30.970 kb on - strand, within GFF2621 at 30.970 kb on - strand, within GFF2621 at 31.258 kb on + strand, within GFF2621 at 31.258 kb on + strand, within GFF2621 at 31.259 kb on - strand, within GFF2621 at 31.259 kb on - strand, within GFF2621 at 31.259 kb on - strand, within GFF2621 at 31.339 kb on + strand, within GFF2621 at 31.339 kb on + strand, within GFF2621 at 31.462 kb on + strand, within GFF2621 at 31.462 kb on + strand, within GFF2621 at 31.462 kb on + strand, within GFF2621 at 31.463 kb on - strand, within GFF2621 at 31.790 kb on - strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.801 kb on + strand at 31.802 kb on - strand at 31.802 kb on - strand at 31.802 kb on - strand at 31.802 kb on - strand at 31.802 kb on - strand at 31.802 kb on - strand at 31.933 kb on + strand at 31.933 kb on + strand at 31.933 kb on + strand at 31.933 kb on + strand at 31.933 kb on + strand at 31.933 kb on + strand at 31.934 kb on - strand at 31.934 kb on - strand at 31.934 kb on - strand at 31.934 kb on - strand at 31.992 kb on + strand at 31.993 kb on - strand at 32.062 kb on + strand at 32.062 kb on + strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.069 kb on - strand at 32.069 kb on - strand at 32.130 kb on + strand, within GFF2622 at 32.130 kb on + strand, within GFF2622 at 32.130 kb on + strand, within GFF2622 at 32.130 kb on + strand, within GFF2622 at 32.131 kb on - strand, within GFF2622 at 32.131 kb on - strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.418 kb on + strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.419 kb on - strand, within GFF2622 at 32.589 kb on + strand, within GFF2622 at 32.589 kb on + strand, within GFF2622 at 32.589 kb on + strand, within GFF2622 at 32.590 kb on - strand, within GFF2622 at 32.590 kb on - strand, within GFF2622 at 32.590 kb on - strand, within GFF2622 at 32.590 kb on - strand, within GFF2622 at 32.590 kb on - strand, within GFF2622 at 32.590 kb on - strand, within GFF2622 at 32.796 kb on + strand, within GFF2622 at 32.797 kb on - strand, within GFF2622 at 32.797 kb on - strand, within GFF2622 at 32.797 kb on - strand, within GFF2622 at 32.797 kb on - strand, within GFF2622 at 32.797 kb on - strand, within GFF2622 at 32.881 kb on + strand, within GFF2622 at 32.882 kb on - strand, within GFF2622 at 32.882 kb on - strand, within GFF2622
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 29,231 + GFF2620 0.77 +2.2 29,238 + GFF2620 0.77 +0.9 29,238 + GFF2620 0.77 -0.3 29,238 + GFF2620 0.77 +1.8 29,238 + GFF2620 0.77 -2.5 29,239 - GFF2620 0.77 +3.5 29,239 - GFF2620 0.77 -1.2 29,250 + GFF2620 0.77 -3.6 29,250 + GFF2620 0.77 +1.7 29,250 + GFF2620 0.77 +1.0 29,251 - GFF2620 0.78 -0.1 29,251 - GFF2620 0.78 -1.6 29,251 - GFF2620 0.78 -0.4 29,251 - GFF2620 0.78 +0.1 29,251 - GFF2620 0.78 -0.7 29,251 - GFF2620 0.78 -0.1 29,292 + GFF2620 0.79 +1.4 29,292 + GFF2620 0.79 -1.5 29,292 + GFF2620 0.79 +0.6 29,292 + GFF2620 0.79 -1.0 29,292 + GFF2620 0.79 -1.9 29,293 - GFF2620 0.79 -0.9 29,293 - GFF2620 0.79 -2.2 29,293 - GFF2620 0.79 -1.6 29,293 - GFF2620 0.79 -2.2 29,293 - GFF2620 0.79 -2.3 29,293 - GFF2620 0.79 -1.0 29,338 - GFF2620 0.80 -0.4 29,430 + GFF2620 0.84 -1.0 29,430 + GFF2620 0.84 +0.2 29,431 - GFF2620 0.84 -2.4 29,431 - GFF2620 0.84 -1.9 29,433 + GFF2620 0.84 -1.6 29,433 + GFF2620 0.84 +0.0 29,433 + GFF2620 0.84 -0.2 29,433 + GFF2620 0.84 -3.8 29,433 + GFF2620 0.84 -0.6 29,434 - GFF2620 0.84 -0.3 29,434 - GFF2620 0.84 +0.8 29,434 - GFF2620 0.84 -1.3 29,434 - GFF2620 0.84 -1.6 29,434 - GFF2620 0.84 +1.4 29,436 + GFF2620 0.84 -0.6 29,436 + GFF2620 0.84 +5.4 29,436 + GFF2620 0.84 +0.7 29,436 + GFF2620 0.84 +1.0 29,436 + GFF2620 0.84 +1.5 29,436 + GFF2620 0.84 +0.4 29,436 + GFF2620 0.84 -2.0 29,436 + GFF2620 0.84 -2.2 29,436 + GFF2620 0.84 -3.4 29,436 + GFF2620 0.84 -0.7 29,436 + GFF2620 0.84 +1.8 29,437 - GFF2620 0.84 -1.7 29,437 - GFF2620 0.84 -0.9 29,437 - GFF2620 0.84 +2.3 29,437 - GFF2620 0.84 +0.5 29,437 - GFF2620 0.84 +0.3 29,437 - GFF2620 0.84 +1.3 29,437 - GFF2620 0.84 -0.9 29,437 - GFF2620 0.84 +1.8 29,437 - GFF2620 0.84 -1.2 29,437 - GFF2620 0.84 -0.8 29,437 - GFF2620 0.84 -0.6 29,437 - GFF2620 0.84 -0.6 29,437 - GFF2620 0.84 -0.5 29,437 - GFF2620 0.84 +0.4 29,437 - GFF2620 0.84 -1.2 29,437 - GFF2620 0.84 -1.0 29,437 - GFF2620 0.84 -0.9 29,437 - GFF2620 0.84 +1.2 29,437 - GFF2620 0.84 +2.6 29,437 - GFF2620 0.84 -0.7 29,437 - GFF2620 0.84 +0.3 29,437 - GFF2620 0.84 -0.9 29,437 - GFF2620 0.84 +1.4 29,490 + GFF2620 0.86 +0.3 29,491 - GFF2620 0.86 -0.3 29,491 - GFF2620 0.86 -1.6 29,502 + GFF2620 0.86 -1.7 29,502 + GFF2620 0.86 +1.1 29,502 + GFF2620 0.86 +0.3 29,502 + GFF2620 0.86 +0.8 29,502 + GFF2620 0.86 -0.2 29,503 - GFF2620 0.86 -0.5 29,503 - GFF2620 0.86 -0.7 29,503 - GFF2620 0.86 -0.4 29,503 - GFF2620 0.86 -0.4 29,556 + GFF2620 0.88 +1.8 29,664 + -2.0 29,724 + +1.0 29,724 + -0.7 29,725 - +1.1 29,725 - -0.9 29,725 - -0.4 29,816 + -1.5 29,829 + -0.7 29,829 + +0.5 29,829 + -1.6 29,829 + +0.3 29,830 - +0.8 29,939 + +2.3 29,940 - +0.3 29,971 + -0.1 29,972 - -1.1 29,977 + -0.6 29,977 + +0.4 29,977 + +0.1 29,978 - +0.7 30,052 + -0.6 30,171 + -1.2 30,265 + -1.3 30,265 + +1.5 30,679 + GFF2621 0.29 -0.2 30,679 + GFF2621 0.29 -0.7 30,679 + GFF2621 0.29 -3.4 30,679 + GFF2621 0.29 -1.3 30,679 + GFF2621 0.29 -0.2 30,680 - GFF2621 0.29 -0.3 30,680 - GFF2621 0.29 +0.4 30,680 - GFF2621 0.29 -0.2 30,680 - GFF2621 0.29 +1.3 30,680 - GFF2621 0.29 +2.8 30,691 + GFF2621 0.29 +1.2 30,691 + GFF2621 0.29 -1.7 30,691 + GFF2621 0.29 -0.9 30,691 + GFF2621 0.29 +0.0 30,691 + GFF2621 0.29 -3.0 30,691 + GFF2621 0.29 -1.1 30,691 + GFF2621 0.29 +1.8 30,691 + GFF2621 0.29 +0.9 30,691 + GFF2621 0.29 -1.7 30,692 - GFF2621 0.29 -3.3 30,692 - GFF2621 0.29 -1.7 30,692 - GFF2621 0.29 +0.1 30,692 - GFF2621 0.29 -0.2 30,692 - GFF2621 0.29 -1.6 30,692 - GFF2621 0.29 +1.8 30,692 - GFF2621 0.29 +0.5 30,692 - GFF2621 0.29 -1.4 30,692 - GFF2621 0.29 +1.8 30,692 - GFF2621 0.29 -1.9 30,692 - GFF2621 0.29 -1.3 30,692 - GFF2621 0.29 -0.7 30,692 - GFF2621 0.29 -1.8 30,969 + GFF2621 0.46 +0.3 30,969 + GFF2621 0.46 +0.0 30,970 - GFF2621 0.46 +0.8 30,970 - GFF2621 0.46 +0.6 30,970 - GFF2621 0.46 -0.2 30,970 - GFF2621 0.46 +2.1 31,258 + GFF2621 0.63 +1.3 31,258 + GFF2621 0.63 -0.0 31,259 - GFF2621 0.63 +0.8 31,259 - GFF2621 0.63 -0.6 31,259 - GFF2621 0.63 +1.7 31,339 + GFF2621 0.68 +1.5 31,339 + GFF2621 0.68 -0.2 31,462 + GFF2621 0.75 +1.2 31,462 + GFF2621 0.75 -2.6 31,462 + GFF2621 0.75 +0.2 31,463 - GFF2621 0.75 -0.5 31,790 - +0.8 31,801 + +0.5 31,801 + -2.9 31,801 + -3.8 31,801 + -1.2 31,801 + +0.1 31,801 + -0.2 31,801 + +0.2 31,801 + +1.8 31,802 - -2.3 31,802 - +3.8 31,802 - +0.3 31,802 - -3.1 31,802 - -2.2 31,802 - -0.5 31,933 + -2.7 31,933 + +0.3 31,933 + -0.4 31,933 + -0.7 31,933 + +0.6 31,933 + -0.5 31,934 - -1.1 31,934 - +0.3 31,934 - -0.6 31,934 - -0.4 31,992 + -1.5 31,993 - -0.5 32,062 + -1.0 32,062 + -0.3 32,068 + +1.0 32,068 + +0.2 32,068 + -2.0 32,068 + -2.1 32,068 + -1.2 32,068 + -1.5 32,069 - +1.8 32,069 - -0.5 32,130 + GFF2622 0.12 +0.1 32,130 + GFF2622 0.12 -0.2 32,130 + GFF2622 0.12 -0.5 32,130 + GFF2622 0.12 +0.0 32,131 - GFF2622 0.12 +1.1 32,131 - GFF2622 0.12 -1.7 32,418 + GFF2622 0.29 -1.9 32,418 + GFF2622 0.29 +1.3 32,418 + GFF2622 0.29 -0.1 32,418 + GFF2622 0.29 +0.3 32,418 + GFF2622 0.29 -1.3 32,418 + GFF2622 0.29 -0.7 32,418 + GFF2622 0.29 +0.9 32,418 + GFF2622 0.29 +0.4 32,418 + GFF2622 0.29 -0.6 32,418 + GFF2622 0.29 -2.2 32,418 + GFF2622 0.29 +1.1 32,418 + GFF2622 0.29 +1.6 32,418 + GFF2622 0.29 -1.9 32,418 + GFF2622 0.29 +0.8 32,418 + GFF2622 0.29 +1.3 32,419 - GFF2622 0.29 -1.9 32,419 - GFF2622 0.29 -1.3 32,419 - GFF2622 0.29 -1.4 32,419 - GFF2622 0.29 -2.1 32,419 - GFF2622 0.29 -0.6 32,419 - GFF2622 0.29 -0.5 32,419 - GFF2622 0.29 -2.1 32,419 - GFF2622 0.29 -0.4 32,589 + GFF2622 0.39 +0.8 32,589 + GFF2622 0.39 +2.4 32,589 + GFF2622 0.39 +0.3 32,590 - GFF2622 0.39 +0.7 32,590 - GFF2622 0.39 +0.0 32,590 - GFF2622 0.39 -0.6 32,590 - GFF2622 0.39 +1.1 32,590 - GFF2622 0.39 -0.8 32,590 - GFF2622 0.39 +0.6 32,796 + GFF2622 0.52 +0.2 32,797 - GFF2622 0.52 -0.7 32,797 - GFF2622 0.52 -0.2 32,797 - GFF2622 0.52 +0.3 32,797 - GFF2622 0.52 +0.8 32,797 - GFF2622 0.52 +0.5 32,881 + GFF2622 0.57 +1.9 32,882 - GFF2622 0.57 -1.6 32,882 - GFF2622 0.57 -0.7
Or see this region's nucleotide sequence