Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2546 and GFF2547 are separated by 105 nucleotides GFF2547 and GFF2548 are separated by 9 nucleotides GFF2548 and GFF2549 are separated by 37 nucleotides
GFF2546 - sodium-solute symporter, putative, at 609,354 to 610,805
GFF2546
GFF2547 - Type I antifreeze protein, at 610,911 to 611,255
GFF2547
GFF2548 - Uncharacterized membrane anchored protein Mext_4159, at 611,265 to 611,897
GFF2548
GFF2549 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 611,935 to 613,740
GFF2549
Position (kb) 611
612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 610.485 kb on + strand, within GFF2546 at 610.485 kb on + strand, within GFF2546 at 610.485 kb on + strand, within GFF2546 at 610.485 kb on + strand, within GFF2546 at 610.485 kb on + strand, within GFF2546 at 610.485 kb on + strand, within GFF2546 at 610.486 kb on - strand, within GFF2546 at 610.486 kb on - strand, within GFF2546 at 610.486 kb on - strand, within GFF2546 at 610.486 kb on - strand, within GFF2546 at 610.486 kb on - strand, within GFF2546 at 610.486 kb on - strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.515 kb on + strand, within GFF2546 at 610.516 kb on - strand, within GFF2546 at 610.516 kb on - strand, within GFF2546 at 610.516 kb on - strand, within GFF2546 at 610.516 kb on - strand, within GFF2546 at 610.516 kb on - strand, within GFF2546 at 610.536 kb on + strand, within GFF2546 at 610.536 kb on + strand, within GFF2546 at 610.537 kb on - strand, within GFF2546 at 610.537 kb on - strand, within GFF2546 at 610.584 kb on + strand, within GFF2546 at 610.584 kb on + strand, within GFF2546 at 610.584 kb on + strand, within GFF2546 at 610.585 kb on - strand, within GFF2546 at 610.585 kb on - strand, within GFF2546 at 610.585 kb on - strand, within GFF2546 at 610.585 kb on - strand, within GFF2546 at 610.855 kb on - strand at 610.855 kb on - strand at 610.856 kb on + strand at 610.920 kb on + strand at 610.920 kb on + strand at 610.920 kb on + strand at 610.920 kb on + strand at 610.926 kb on + strand at 610.926 kb on + strand at 610.926 kb on + strand at 611.070 kb on + strand, within GFF2547 at 611.070 kb on + strand, within GFF2547 at 611.070 kb on + strand, within GFF2547 at 611.070 kb on + strand, within GFF2547 at 611.406 kb on + strand, within GFF2548 at 611.553 kb on + strand, within GFF2548 at 611.553 kb on + strand, within GFF2548 at 611.553 kb on + strand, within GFF2548 at 611.553 kb on + strand, within GFF2548 at 611.553 kb on + strand, within GFF2548 at 611.553 kb on + strand, within GFF2548 at 611.727 kb on + strand, within GFF2548 at 611.727 kb on + strand, within GFF2548 at 611.760 kb on + strand, within GFF2548 at 611.760 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.826 kb on + strand, within GFF2548 at 611.830 kb on + strand, within GFF2548
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 610,485 + GFF2546 0.78 -3.9 610,485 + GFF2546 0.78 -0.4 610,485 + GFF2546 0.78 -0.6 610,485 + GFF2546 0.78 -1.4 610,485 + GFF2546 0.78 -2.0 610,485 + GFF2546 0.78 +0.0 610,486 - GFF2546 0.78 -3.2 610,486 - GFF2546 0.78 -0.6 610,486 - GFF2546 0.78 +0.6 610,486 - GFF2546 0.78 +2.0 610,486 - GFF2546 0.78 +0.4 610,486 - GFF2546 0.78 -1.3 610,515 + GFF2546 0.80 -1.6 610,515 + GFF2546 0.80 +0.2 610,515 + GFF2546 0.80 -0.0 610,515 + GFF2546 0.80 +0.9 610,515 + GFF2546 0.80 -1.0 610,515 + GFF2546 0.80 -0.5 610,515 + GFF2546 0.80 -2.1 610,515 + GFF2546 0.80 +0.2 610,515 + GFF2546 0.80 -1.1 610,515 + GFF2546 0.80 -1.6 610,515 + GFF2546 0.80 -0.4 610,515 + GFF2546 0.80 -1.4 610,516 - GFF2546 0.80 -0.3 610,516 - GFF2546 0.80 +0.4 610,516 - GFF2546 0.80 +0.5 610,516 - GFF2546 0.80 -1.9 610,516 - GFF2546 0.80 +0.8 610,536 + GFF2546 0.81 -0.5 610,536 + GFF2546 0.81 -0.1 610,537 - GFF2546 0.81 -3.3 610,537 - GFF2546 0.81 +0.1 610,584 + GFF2546 0.85 -1.8 610,584 + GFF2546 0.85 -2.4 610,584 + GFF2546 0.85 -0.1 610,585 - GFF2546 0.85 +1.2 610,585 - GFF2546 0.85 -0.6 610,585 - GFF2546 0.85 +1.0 610,585 - GFF2546 0.85 -0.1 610,855 - -2.1 610,855 - +1.3 610,856 + +2.0 610,920 + -0.1 610,920 + -0.8 610,920 + -1.3 610,920 + -1.3 610,926 + -1.0 610,926 + +0.0 610,926 + -1.1 611,070 + GFF2547 0.46 -0.6 611,070 + GFF2547 0.46 +1.0 611,070 + GFF2547 0.46 -1.3 611,070 + GFF2547 0.46 -0.3 611,406 + GFF2548 0.22 +1.0 611,553 + GFF2548 0.45 -0.4 611,553 + GFF2548 0.45 -0.3 611,553 + GFF2548 0.45 -0.8 611,553 + GFF2548 0.45 -2.7 611,553 + GFF2548 0.45 -2.2 611,553 + GFF2548 0.45 +0.4 611,727 + GFF2548 0.73 -1.0 611,727 + GFF2548 0.73 -2.1 611,760 + GFF2548 0.78 -1.3 611,760 + GFF2548 0.78 +1.7 611,826 + GFF2548 0.89 -1.7 611,826 + GFF2548 0.89 +0.0 611,826 + GFF2548 0.89 +0.2 611,826 + GFF2548 0.89 +2.0 611,826 + GFF2548 0.89 +3.9 611,826 + GFF2548 0.89 -2.0 611,826 + GFF2548 0.89 +0.0 611,826 + GFF2548 0.89 -0.3 611,826 + GFF2548 0.89 -0.6 611,826 + GFF2548 0.89 +0.2 611,826 + GFF2548 0.89 +0.0 611,826 + GFF2548 0.89 -0.6 611,826 + GFF2548 0.89 -4.3 611,826 + GFF2548 0.89 -1.3 611,826 + GFF2548 0.89 -1.8 611,826 + GFF2548 0.89 -1.2 611,826 + GFF2548 0.89 -2.0 611,830 + GFF2548 0.89 -1.7
Or see this region's nucleotide sequence